当前解析结果
SmilChr03G004511| 统一新 Gene ID | SmilChr03G004511 |
|---|---|
| 名称 | SmilChr03G004511 |
| 描述 | putative L-type lectin-domain containing receptor kinase V.2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63186729 - 63187639 / - |
| NCBI Gene ID | LOC131015468 |
|---|---|
| GeneID | 131015468 |
| locus_tag | - |
| NCBI Name | LOC131015468 |
| 原始查询 | SmilChr03G004511 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative L-type lectin-domain containing receptor kinase V.2 |
| 产物 | putative L-type lectin-domain containing receptor kinase V.2 |
| Arabidopsis | AT5G39390 (AT5G39390)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833935] identity=33.6; qcov=1.46; evalue=2.99e-25; confidence=low |
| Rice | Os04g0213800 (OsRLCK137)- identity=40.1; qcov=1.03; evalue=5.32e-27; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015468 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057799874.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057799874.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799874.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799874.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799874.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63186883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B71,C22,C41 |
Chr3:63186938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,C40,C42 |
Chr3:63186949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr3:63186962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C30 |
Chr3:63187002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr3:63187008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B110,B38,C2,D10 |
Chr3:63187363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr3:63187415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C63 |
Chr3:63187424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr3:63187442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C80 |
Chr3:63187472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:63187496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799874.1PF07714
PK_Tyr_Ser-Thr 1-79 aa
PF00069
Pkinase 1-97 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799874.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 1 | 79 | 6.8e-16 | 59.1 | Protein tyrosine and serine/threonine kinase |
XP_057799874.1 |
Pfam | PF00069 |
Pkinase | Domain | 1 | 97 | 1.2e-16 | 61.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。