当前解析结果
SmilChr03G004524| 统一新 Gene ID | SmilChr03G004524 |
|---|---|
| 名称 | SmilChr03G004524 |
| 描述 | ultraviolet-B receptor UVR8 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63289198 - 63292092 / - |
| NCBI Gene ID | LOC131015356 |
|---|---|
| GeneID | 131015356 |
| locus_tag | - |
| NCBI Name | LOC131015356 |
| 原始查询 | SmilChr03G004524 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ultraviolet-B receptor UVR8 |
| 产物 | ultraviolet-B receptor UVR8 |
| Arabidopsis | AT5G11580 (AT5G11580)Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:831030] identity=52.9; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0725600- identity=55; qcov=0.976; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015356 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057799713.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057799713.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799713.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799713.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799713.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63289536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr3:63289576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:63289592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr3:63289735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:63289741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,C43,C59 |
Chr3:63289808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr3:63289814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:63289824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C37 |
Chr3:63289826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B85 |
Chr3:63289854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B71 |
Chr3:63289901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B140,B24 |
Chr3:63289951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799713.1PF25390
WD40_RLD 11-277 aa
PF13540
RCC1_2 18-46 aa
PF00415
RCC1 34-90 aa
PF13540
RCC1_2 77-106 aa
PF13540
RCC1_2 203-240 aa
PF00415
RCC1 230-279 aa
PF00415
RCC1 293-339 aa
PF00415
RCC1 410-434 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799713.1 |
Pfam | PF25390 |
WD40_RLD | Repeat | 11 | 277 | 1.8e-96 | 324.4 | RCC1-like domain |
XP_057799713.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 18 | 46 | 6.5e-43 | 144.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057799713.1 |
Pfam | PF00415 |
RCC1 | Repeat | 34 | 90 | 4.8e-60 | 200.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057799713.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 77 | 106 | 6.5e-43 | 144.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057799713.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 203 | 240 | 6.5e-43 | 144.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057799713.1 |
Pfam | PF00415 |
RCC1 | Repeat | 230 | 279 | 4.8e-60 | 200.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057799713.1 |
Pfam | PF00415 |
RCC1 | Repeat | 293 | 339 | 4.8e-60 | 200.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057799713.1 |
Pfam | PF00415 |
RCC1 | Repeat | 410 | 434 | 4.8e-60 | 200.7 | Regulator of chromosome condensation (RCC1) repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。