当前解析结果
SmilChr03G004551| 统一新 Gene ID | SmilChr03G004551 |
|---|---|
| 名称 | SmilChr03G004551 |
| 描述 | receptor protein-tyrosine kinase CEPR1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63478656 - 63481096 / + |
| NCBI Gene ID | LOC131015346 |
|---|---|
| GeneID | 131015346 |
| locus_tag | - |
| NCBI Name | LOC131015346 |
| 原始查询 | SmilChr03G004551 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor protein-tyrosine kinase CEPR1-like |
| 产物 | receptor protein-tyrosine kinase CEPR1-like |
| Arabidopsis | AT5G25930 (AT5G25930)kinase family with leucine-rich repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832662] identity=41.6; qcov=0.901; evalue=3.63e-132; confidence=medium |
| Rice | Os06g0557100- identity=39.8; qcov=0.928; evalue=1.11e-126; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015346 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799699.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799699.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799699.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799699.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799699.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63479128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:63479129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,B50,C8 |
Chr3:63479194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,B16 |
Chr3:63479287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B16,C45 |
Chr3:63479308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B131 |
Chr3:63479326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:63479365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B16,C45 |
Chr3:63479379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B120,B71 |
Chr3:63479497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B21,B41,B50,C8 |
Chr3:63479547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B16,C45 |
Chr3:63479613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:63479662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B122,B41,B50,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799699.1PF00560
LRR_1 111-130 aa
PF00560
LRR_1 158-180 aa
PF00069
Pkinase 352-630 aa
PF07714
PK_Tyr_Ser-Thr 353-631 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799699.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 111 | 130 | 1.9e-13 | 48.4 | Leucine Rich Repeat |
XP_057799699.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 158 | 180 | 1.9e-13 | 48.4 | Leucine Rich Repeat |
XP_057799699.1 |
Pfam | PF00069 |
Pkinase | Domain | 352 | 630 | 1.7e-41 | 143.1 | Protein kinase domain |
XP_057799699.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 353 | 631 | 1.3e-40 | 140.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。