Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004558`

染色体: Chr03 坐标: 63543151-63546017 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004558`
名称	SmilChr03G004558
描述	serine/threonine-protein kinase Aurora-2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63543151 - 63546017 / `+`

ID 对照

NCBI Gene ID	`LOC131015427`
GeneID	`131015427`
locus_tag	`-`
NCBI Name	`LOC131015427`
原始查询	`SmilChr03G004558`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase Aurora-2-like
产物	serine/threonine-protein kinase Aurora-2-like
Arabidopsis	`AT4G32830` (AUR1) ataurora1 [Source:NCBI gene (formerly Entrezgene);Acc:829419] identity=85.3; qcov=0.997; evalue=0; confidence=high
Rice	`Os01g0191800` - identity=82.3; qcov=1; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005876 (spindle microtubule); GO:0006468 (protein phosphorylation); GO:0007052 (mitotic spindle organization); GO:0031616 (spindle pole centrosome); GO:0032133 (chromosome passenger complex); GO:0032465 (regulation of cytokinesis); GO:0051233 (spindle midzone)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131015427

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057799805.1`
2	Nucleus	细胞核	0.80000	`XP_057799805.1`
3	Cytoplasm	细胞质	0.80000	`XP_057799805.1`
4	Midbody	Midbody	0.60000	`XP_057799805.1`
5	Chromosome	染色体	0.20000	`XP_057799805.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63543953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C59,C8
`Chr3:63544403`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B138
`Chr3:63544403`	`TG`	`T`	1bp_deletion	CDS_variant	1	B138
`Chr3:63544468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,D11
`Chr3:63545080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,B80
`Chr3:63545246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr3:63545254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr3:63545303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr3:63545661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799805.1

294 aa

147

294

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 32-282 aa PF07714 PK_Tyr_Ser-Thr 33-278 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799805.1`	Pfam	`PF00069`	Pkinase	Domain	32	282	2.8e-74	250.6	Protein kinase domain
`XP_057799805.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	33	278	2.5e-41	142.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943822.1
CAAATAGACCGTTTATATTTTCCTTCAATTTCAAATCAAGCACAAATTTTGTCCCGCTTCCCTCCCTCTTCTCTCTCTCTCTCTCTCTCGTAAATTGTGAGTGCGGGAGTGCGTGTTTACGGAAATGGGGATCGCGACGGAATCATCTCGAGAAGCGAACAAGTTTTTTTCTGAGAGCAAAGCAGCAGAGAAGAAGCGCTGGACTCTCAATGACTTCGCTATAGGAAAGCCTCTAGGGAGAGGAAAGTTTGGACATGTAT...

CDS

1 records

下载 CDS FASTA

LOC131015427
ATGGGGATCGCGACGGAATCATCTCGAGAAGCGAACAAGTTTTTTTCTGAGAGCAAAGCAGCAGAGAAGAAGCGCTGGACTCTCAATGACTTCGCTATAGGAAAGCCTCTAGGGAGAGGAAAGTTTGGACATGTATATCTAGCTACGGAGAAGAGGAGCAATCACGTGGTGGCTCTGAAGGTGTTGTTCAAGAGCCAGCTGAAACAGTCTGAGGTTGAACATCAGCTTCGTCGTGAAGTCGAAATACAGAGCCATCTCCG...

Protein

1 records

下载 Protein FASTA

XP_057799805.1
MGIATESSREANKFFSESKAAEKKRWTLNDFAIGKPLGRGKFGHVYLATEKRSNHVVALKVLFKSQLKQSEVEHQLRREVEIQSHLRHPNILRLYGYFYDQKHVFLILEYAAKGELYRELQKCKYFSERRAATYIASLARALIYCHGKHVIHRDIKPENLLVGAEGDLKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESAEHDANVDIWSLGVLCYEFLYGVPPFEAKEHSDTYIRITQVDLKFPPKPILSSAAKDLIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器