当前解析结果
SmilChr03G004562| 统一新 Gene ID | SmilChr03G004562 |
|---|---|
| 名称 | SmilChr03G004562 |
| 描述 | pentatricopeptide repeat-containing protein At2g34400 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63561255 - 63565218 / + |
| NCBI Gene ID | LOC131015347 |
|---|---|
| GeneID | 131015347 |
| locus_tag | - |
| NCBI Name | LOC131015347 |
| 原始查询 | SmilChr03G004562 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g34400 |
| 产物 | pentatricopeptide repeat-containing protein At2g34400 |
| Arabidopsis | AT2G34400 (AT2G34400)Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818003] identity=53.1; qcov=0.984; evalue=0; confidence=high |
| Rice | Os05g0307200- identity=47.8; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015347 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057799700.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799700.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799700.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799700.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799700.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63561305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B54,B7,C58 |
Chr3:63561338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A18,B1,B69,C40 |
Chr3:63561398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr3:63561435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B1,B69,C40 |
Chr3:63561444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B32 |
Chr3:63561468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B59,C1 |
Chr3:63561515 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | A6,B101,B126,B33,B54,B7,C58 |
Chr3:63561636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B59,C1 |
Chr3:63561666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:63561699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B59,C1 |
Chr3:63561987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B89,C40,C9 |
Chr3:63562147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799700.1PF13041
PPR_2 85-125 aa
PF01535
PPR 88-117 aa
PF01535
PPR 161-187 aa
PF13041
PPR_2 187-233 aa
PF13812
PPR_3 187-235 aa
PF01535
PPR 189-219 aa
PF01535
PPR 262-288 aa
PF13812
PPR_3 289-334 aa
PF13041
PPR_2 289-335 aa
PF01535
PPR 290-317 aa
PF01535
PPR 363-387 aa
PF13041
PPR_2 389-437 aa
PF01535
PPR 391-419 aa
PF01535
PPR 428-453 aa
PF01535
PPR 464-490 aa
PF20431
E_motif 509-568 aa
XP_057799701.1PF13041
PPR_2 85-125 aa
PF01535
PPR 88-117 aa
PF01535
PPR 161-187 aa
PF13041
PPR_2 187-233 aa
PF13812
PPR_3 187-235 aa
PF01535
PPR 189-219 aa
PF01535
PPR 262-288 aa
PF13812
PPR_3 289-334 aa
PF13041
PPR_2 289-335 aa
PF01535
PPR 290-317 aa
PF01535
PPR 363-387 aa
PF13041
PPR_2 389-437 aa
PF01535
PPR 391-419 aa
PF01535
PPR 428-453 aa
PF01535
PPR 464-490 aa
PF20431
E_motif 509-568 aa
XP_057799702.1PF13041
PPR_2 85-125 aa
PF01535
PPR 88-117 aa
PF01535
PPR 161-187 aa
PF13041
PPR_2 187-233 aa
PF13812
PPR_3 187-235 aa
PF01535
PPR 189-219 aa
PF01535
PPR 262-288 aa
PF13812
PPR_3 289-334 aa
PF13041
PPR_2 289-335 aa
PF01535
PPR 290-317 aa
PF01535
PPR 363-387 aa
PF13041
PPR_2 389-437 aa
PF01535
PPR 391-419 aa
PF01535
PPR 428-453 aa
PF01535
PPR 464-490 aa
PF20431
E_motif 509-568 aa
XP_057799703.1PF13041
PPR_2 85-125 aa
PF01535
PPR 88-117 aa
PF01535
PPR 161-187 aa
PF13041
PPR_2 187-233 aa
PF13812
PPR_3 187-235 aa
PF01535
PPR 189-219 aa
PF01535
PPR 262-288 aa
PF13812
PPR_3 289-334 aa
PF13041
PPR_2 289-335 aa
PF01535
PPR 290-317 aa
PF01535
PPR 363-387 aa
PF13041
PPR_2 389-437 aa
PF01535
PPR 391-419 aa
PF01535
PPR 428-453 aa
PF01535
PPR 464-490 aa
PF20431
E_motif 509-568 aa
XP_057799704.1PF13041
PPR_2 85-125 aa
PF01535
PPR 88-117 aa
PF01535
PPR 161-187 aa
PF13041
PPR_2 187-233 aa
PF13812
PPR_3 187-235 aa
PF01535
PPR 189-219 aa
PF01535
PPR 262-288 aa
PF13812
PPR_3 289-334 aa
PF13041
PPR_2 289-335 aa
PF01535
PPR 290-317 aa
PF01535
PPR 363-387 aa
PF13041
PPR_2 389-437 aa
PF01535
PPR 391-419 aa
PF01535
PPR 428-453 aa
PF01535
PPR 464-490 aa
PF20431
E_motif 509-568 aa
XP_057799705.1PF13041
PPR_2 85-125 aa
PF01535
PPR 88-117 aa
PF01535
PPR 161-187 aa
PF13041
PPR_2 187-233 aa
PF13812
PPR_3 187-235 aa
PF01535
PPR 189-219 aa
PF01535
PPR 262-288 aa
PF13812
PPR_3 289-334 aa
PF13041
PPR_2 289-335 aa
PF01535
PPR 290-317 aa
PF01535
PPR 363-387 aa
PF13041
PPR_2 389-437 aa
PF01535
PPR 391-419 aa
PF01535
PPR 428-453 aa
PF01535
PPR 464-490 aa
PF20431
E_motif 509-568 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799700.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 85 | 125 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 117 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 187 | 233 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799700.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 235 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 219 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 262 | 288 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 289 | 334 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799700.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 289 | 335 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 317 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 363 | 387 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 437 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 391 | 419 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 453 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 490 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799700.1 |
Pfam | PF20431 |
E_motif | Repeat | 509 | 568 | 3.3e-21 | 76.0 | E motif |
XP_057799701.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 85 | 125 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 117 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 187 | 233 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799701.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 235 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 219 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 262 | 288 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 289 | 334 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799701.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 289 | 335 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 317 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 363 | 387 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 437 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 391 | 419 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 453 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 490 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799701.1 |
Pfam | PF20431 |
E_motif | Repeat | 509 | 568 | 3.3e-21 | 76.0 | E motif |
XP_057799702.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 85 | 125 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 117 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 187 | 233 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799702.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 235 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 219 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 262 | 288 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 289 | 334 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799702.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 289 | 335 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 317 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 363 | 387 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 437 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 391 | 419 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 453 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 490 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799702.1 |
Pfam | PF20431 |
E_motif | Repeat | 509 | 568 | 3.3e-21 | 76.0 | E motif |
XP_057799703.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 85 | 125 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 117 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 187 | 233 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799703.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 235 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 219 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 262 | 288 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 289 | 334 | 3.3e-28 | 98.3 | Pentatricopeptide repeat domain |
XP_057799703.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 289 | 335 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 317 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 363 | 387 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 437 | 5.5e-65 | 216.0 | PPR repeat family |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 391 | 419 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 453 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 490 | 3.8e-60 | 196.7 | PPR repeat |
XP_057799703.1 |
Pfam | PF20431 |
E_motif | Repeat | 509 | 568 | 3.3e-21 | 76.0 | E motif |
XP_057799704.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 85 | 125 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 117 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 187 | 233 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799704.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 235 | 2.4e-28 | 98.7 | Pentatricopeptide repeat domain |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 219 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 262 | 288 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 289 | 334 | 2.4e-28 | 98.7 | Pentatricopeptide repeat domain |
XP_057799704.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 289 | 335 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 317 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 363 | 387 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 437 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 391 | 419 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 453 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 490 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799704.1 |
Pfam | PF20431 |
E_motif | Repeat | 509 | 568 | 3e-21 | 76.2 | E motif |
XP_057799705.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 85 | 125 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 117 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 187 | 233 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799705.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 235 | 2.4e-28 | 98.7 | Pentatricopeptide repeat domain |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 219 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 262 | 288 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 289 | 334 | 2.4e-28 | 98.7 | Pentatricopeptide repeat domain |
XP_057799705.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 289 | 335 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 317 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 363 | 387 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 437 | 4.7e-65 | 216.2 | PPR repeat family |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 391 | 419 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 453 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 490 | 2.4e-60 | 197.4 | PPR repeat |
XP_057799705.1 |
Pfam | PF20431 |
E_motif | Repeat | 509 | 568 | 3e-21 | 76.2 | E motif |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。