当前解析结果
SmilChr03G004580| 统一新 Gene ID | SmilChr03G004580 |
|---|---|
| 名称 | SmilChr03G004580 |
| 描述 | cation/H(+) antiporter 28 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63672632 - 63676114 / - |
| NCBI Gene ID | LOC131015332 |
|---|---|
| GeneID | 131015332 |
| locus_tag | - |
| NCBI Name | LOC131015332 |
| 原始查询 | SmilChr03G004580 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation/H(+) antiporter 28 |
| 产物 | cation/H(+) antiporter 28 |
| Arabidopsis | AT3G52080 (chx28)cation/hydrogen exchanger 28 [Source:NCBI gene (formerly Entrezgene);Acc:824371] identity=48; qcov=0.985; evalue=0; confidence=high |
| Rice | Os05g0485000 (OsCHX16)- identity=30.4; qcov=0.985; evalue=2.17e-94; confidence=low |
| GO | GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015332 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799672.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057799672.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057799672.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799672.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799672.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63672794 |
ACT |
A |
2bp_deletion | frameshift_variant | 17 | B104,B120,B121,B126,B132,B140,B37,B60,B75,C14,C20,C25,C26,C49,C5,C7,C9 |
Chr3:63672879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,C13 |
Chr3:63672954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:63672980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr3:63673008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr3:63673014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,B60 |
Chr3:63673162 |
GCC |
G |
2bp_deletion | frameshift_variant | 2 | A1,B139 |
Chr3:63673162 |
GCC |
G |
2bp_deletion | CDS_variant | 2 | A1,B139 |
Chr3:63673230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr3:63673251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:63673287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B64,C45 |
Chr3:63673343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799672.1PF00999
Na_H_Exchanger 37-423 aa
PF23256
CHX17_2nd 479-607 aa
PF23259
CHX17_C 622-776 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799672.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 37 | 423 | 1.5e-29 | 103.8 | Sodium/hydrogen exchanger, transmembrane |
XP_057799672.1 |
Pfam | PF23256 |
CHX17_2nd | Domain | 479 | 607 | 3.6e-35 | 121.5 | Plant cation/H(+) antiporter domain |
XP_057799672.1 |
Pfam | PF23259 |
CHX17_C | Domain | 622 | 776 | 3.7e-37 | 128.4 | Plant cation/H(+) antiporter, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。