当前解析结果
SmilChr03G004584| 统一新 Gene ID | SmilChr03G004584 |
|---|---|
| 名称 | SmilChr03G004584 |
| 描述 | uncharacterized SmilChr03G004584 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63689275 - 63692718 / + |
| NCBI Gene ID | LOC131015429 |
|---|---|
| GeneID | 131015429 |
| locus_tag | - |
| NCBI Name | LOC131015429 |
| 原始查询 | SmilChr03G004584 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SNF2 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:831050]; symbol=AT5G11780; hit=AT5G11780; species=arabidopsis; confidence=low |
| 产物 | SNF2 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:831050]; symbol=AT5G11780; hit=AT5G11780; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G11780 (AT5G11780)SNF2 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:831050] identity=28.7; qcov=0.937; evalue=2.79e-22; confidence=low |
| Rice | Os01g0600300 (P0025A05.39-1)- identity=30.7; qcov=0.899; evalue=1.24e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015429 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799811.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057799811.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799811.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799811.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799811.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63690834 |
G |
GCC |
2bp_insertion | frameshift_variant | 1 | C48 |
Chr3:63690834 |
G |
GCC |
2bp_insertion | CDS_variant | 1 | C48 |
Chr3:63691057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr3:63691179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,B77,B85 |
Chr3:63691245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B44,C13,C25,C26,C7 |
Chr3:63691414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B77,B85,C14 |
Chr3:63691415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C48 |
Chr3:63691646 |
G |
A |
EMS_canonical_SNV | stop_gained | 26 | A4,B100,B104,B105,B110,B111,B114,B12,B49,B5,B60,B65,B66,B7,B79,B89,C2,C38,C46,C5,C51,C55,C77,D1,D2,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。