当前解析结果
SmilChr03G004602| 统一新 Gene ID | SmilChr03G004602 |
|---|---|
| 名称 | SmilChr03G004602 |
| 描述 | uncharacterized SmilChr03G004602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63802678 - 63805243 / - |
| NCBI Gene ID | LOC131015343 |
|---|---|
| GeneID | 131015343 |
| locus_tag | - |
| NCBI Name | LOC131015343 |
| 原始查询 | SmilChr03G004602 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G59120 (AT3G59120)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081] identity=27.4; qcov=0.903; evalue=4.78e-39; confidence=low |
| Rice | Os07g0611200- identity=28; qcov=0.33; evalue=1.36e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015343 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057799694.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057799694.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057799694.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799694.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799694.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63802833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B16,B27,B48,B55,B7 |
Chr3:63802838 |
T |
TC |
1bp_insertion | frameshift_variant | 10 | A4,A6,B103,B126,B137,B33,B51,C3,C78,D2 |
Chr3:63802841 |
CT |
C |
1bp_deletion | frameshift_variant | 10 | A4,A6,B103,B126,B137,B33,B51,C3,C78,D2 |
Chr3:63802858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr3:63802863 |
AGT |
A |
2bp_deletion | frameshift_variant | 5 | B32,B40,C4,C40,C69 |
Chr3:63802863 |
AGT |
A |
2bp_deletion | CDS_variant | 5 | B32,B40,C4,C40,C69 |
Chr3:63802866 |
A |
ACT |
2bp_insertion | frameshift_variant | 5 | B32,B40,C4,C40,C69 |
Chr3:63802866 |
A |
ACT |
2bp_insertion | CDS_variant | 5 | B32,B40,C4,C40,C69 |
Chr3:63802909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B46,B67 |
Chr3:63802922 |
TA |
T |
1bp_deletion | frameshift_variant | 3 | A18,B46,B67 |
Chr3:63802922 |
TA |
T |
1bp_deletion | CDS_variant | 3 | A18,B46,B67 |
Chr3:63802967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799694.1PF03107
C1_2 170-216 aa
PF03107
C1_2 226-276 aa
PF03107
C1_2 415-462 aa
PF03107
C1_2 473-517 aa
PF03107
C1_2 531-579 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799694.1 |
Pfam | PF03107 |
C1_2 | Domain | 170 | 216 | 2.9e-52 | 175.5 | C1 domain |
XP_057799694.1 |
Pfam | PF03107 |
C1_2 | Domain | 226 | 276 | 2.9e-52 | 175.5 | C1 domain |
XP_057799694.1 |
Pfam | PF03107 |
C1_2 | Domain | 415 | 462 | 2.9e-52 | 175.5 | C1 domain |
XP_057799694.1 |
Pfam | PF03107 |
C1_2 | Domain | 473 | 517 | 2.9e-52 | 175.5 | C1 domain |
XP_057799694.1 |
Pfam | PF03107 |
C1_2 | Domain | 531 | 579 | 2.9e-52 | 175.5 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。