当前解析结果
SmilChr03G004610| 统一新 Gene ID | SmilChr03G004610 |
|---|---|
| 名称 | SmilChr03G004610 |
| 描述 | uncharacterized SmilChr03G004610 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63829153 - 63831448 / - |
| NCBI Gene ID | LOC131019173 |
|---|---|
| GeneID | 131019173 |
| locus_tag | - |
| NCBI Name | LOC131019173 |
| 原始查询 | SmilChr03G004610 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G59120 (AT3G59120)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081] identity=27.9; qcov=0.955; evalue=3.42e-40; confidence=low |
| Rice | Os07g0610200- identity=28.7; qcov=0.337; evalue=2.75e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00130 (C1_1); PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019173 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803841.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057803841.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057803841.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803841.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803841.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63829152 |
TTC |
T |
2bp_deletion | frameshift_variant | 6 | A20,B23,B65,B73,C6,C8 |
Chr3:63829155 |
AG |
A |
1bp_deletion | frameshift_variant | 17 | A21,B113,B126,B136,B22,B34,B41,B42,B51,B60,B68,B76,C20,C22,C32,C74,C84 |
Chr3:63829237 |
C |
CCA |
2bp_insertion | frameshift_variant | 2 | B93,D9 |
Chr3:63829237 |
C |
CCA |
2bp_insertion | CDS_variant | 2 | B93,D9 |
Chr3:63829282 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr3:63829326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr3:63829349 |
TAG |
T |
2bp_deletion | frameshift_variant | 2 | B96,C14 |
Chr3:63829349 |
TAG |
T |
2bp_deletion | CDS_variant | 2 | B96,C14 |
Chr3:63829361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr3:63829363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr3:63829397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,C52 |
Chr3:63829404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803841.1PF03107
C1_2 23-67 aa
PF03107
C1_2 168-213 aa
PF03107
C1_2 223-273 aa
PF00130
C1_1 243-280 aa
PF03107
C1_2 410-457 aa
PF03107
C1_2 526-569 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803841.1 |
Pfam | PF03107 |
C1_2 | Domain | 23 | 67 | 7.3e-49 | 164.6 | C1 domain |
XP_057803841.1 |
Pfam | PF03107 |
C1_2 | Domain | 168 | 213 | 7.3e-49 | 164.6 | C1 domain |
XP_057803841.1 |
Pfam | PF03107 |
C1_2 | Domain | 223 | 273 | 7.3e-49 | 164.6 | C1 domain |
XP_057803841.1 |
Pfam | PF00130 |
C1_1 | Domain | 243 | 280 | 7.6e-09 | 36.0 | Phorbol esters/diacylglycerol binding domain (C1 domain) |
XP_057803841.1 |
Pfam | PF03107 |
C1_2 | Domain | 410 | 457 | 7.3e-49 | 164.6 | C1 domain |
XP_057803841.1 |
Pfam | PF03107 |
C1_2 | Domain | 526 | 569 | 7.3e-49 | 164.6 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。