Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004612`

染色体: Chr03 坐标: 63839534-63849597 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004612`
名称	SmilChr03G004612
描述	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63839534 - 63849597 / `-`

ID 对照

NCBI Gene ID	`LOC131015336`
GeneID	`131015336`
locus_tag	`-`
NCBI Name	`LOC131015336`
原始查询	`SmilChr03G004612`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like
产物	ATP-dependent zinc metalloprotease FTSH 4%2C mitochondrial-like
Arabidopsis	`AT2G26140` (ftsh4) FTSH protease 4 [Source:NCBI gene (formerly Entrezgene);Acc:817154] identity=76; qcov=0.944; evalue=0; confidence=high
Rice	`Os01g0574500` (OsFtsH5) - identity=73.7; qcov=0.968; evalue=0; confidence=high
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0009534 (chloroplast thylakoid); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF01434 (Peptidase_M41); PF07728 (AAA_5); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131015336

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057799683.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057799683.1`
3	Mitochondrion inner membrane	线粒体内膜	0.60000	`XP_057799683.1`
4	Nucleus	细胞核	0.00000	`XP_057799683.1`
5	Chromosome	染色体	0.00000	`XP_057799683.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63839864`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C16
`Chr3:63839864`	`C`	`CA`	1bp_insertion	CDS_variant	1	C16
`Chr3:63839865`	`G`	`GCT`	2bp_insertion	frameshift_variant	1	C16
`Chr3:63839865`	`G`	`GCT`	2bp_insertion	CDS_variant	1	C16
`Chr3:63839880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B4
`Chr3:63839997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B58,B94,C14,C16,C59
`Chr3:63840003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,C14,C59
`Chr3:63840045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,C34,C54
`Chr3:63840048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr3:63840114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:63840126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:63840141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799683.1

717 aa

358

717

AAA_5

AAA

AAA_lid_3

Peptidase_M41

PF07728 AAA_5 262-331 aa PF00004 AAA 263-392 aa PF17862 AAA_lid_3 415-458 aa PF01434 Peptidase_M41 474-654 aa

XP_057799684.1

717 aa

358

717

AAA_5

AAA

AAA_lid_3

Peptidase_M41

PF07728 AAA_5 262-331 aa PF00004 AAA 263-392 aa PF17862 AAA_lid_3 415-458 aa PF01434 Peptidase_M41 474-654 aa

XP_057799685.1

716 aa

358

716

AAA_5

AAA

AAA_lid_3

Peptidase_M41

PF07728 AAA_5 261-330 aa PF00004 AAA 262-391 aa PF17862 AAA_lid_3 414-457 aa PF01434 Peptidase_M41 473-653 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799683.1`	Pfam	`PF07728`	AAA_5	Domain	262	331	1.3e-05	26.0	AAA domain (dynein-related subfamily)
`XP_057799683.1`	Pfam	`PF00004`	AAA	Domain	263	392	1.4e-47	162.1	ATPase family associated with various cellular activities (AAA)
`XP_057799683.1`	Pfam	`PF17862`	AAA_lid_3	Domain	415	458	6.1e-11	42.4	AAA+ lid domain
`XP_057799683.1`	Pfam	`PF01434`	Peptidase_M41	Domain	474	654	3.2e-67	226.8	Peptidase family M41
`XP_057799684.1`	Pfam	`PF07728`	AAA_5	Domain	262	331	1.3e-05	25.9	AAA domain (dynein-related subfamily)
`XP_057799684.1`	Pfam	`PF00004`	AAA	Domain	263	392	1.4e-47	162.1	ATPase family associated with various cellular activities (AAA)
`XP_057799684.1`	Pfam	`PF17862`	AAA_lid_3	Domain	415	458	6.4e-11	42.3	AAA+ lid domain
`XP_057799684.1`	Pfam	`PF01434`	Peptidase_M41	Domain	474	654	3.2e-67	226.8	Peptidase family M41
`XP_057799685.1`	Pfam	`PF07728`	AAA_5	Domain	261	330	1.3e-05	26.0	AAA domain (dynein-related subfamily)
`XP_057799685.1`	Pfam	`PF00004`	AAA	Domain	262	391	1.4e-47	162.1	ATPase family associated with various cellular activities (AAA)
`XP_057799685.1`	Pfam	`PF17862`	AAA_lid_3	Domain	414	457	6.1e-11	42.4	AAA+ lid domain
`XP_057799685.1`	Pfam	`PF01434`	Peptidase_M41	Domain	473	653	3.2e-67	226.8	Peptidase family M41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943701.1
TGAAGAGTGTGTGCTTTTTCGTTTTAATTATTATTTTCATCTTTTCTGCGTTTCATTTTTCCGCGTCTGCTGATGCTGTTGGAGAAAGATGGCACTGAGGCGCCTCATCAATCAGGTCAGAAGACAGGAGTCTCAGTTGAGGCAGCTGAGCAATTTGGCTGCTCGACCGTATCGAGCTTCCCCTTACACTAGGGGAGGAGTGCACAAGCTTTTGAGTCCCTTGGGAACAAGTACCTTAGGAAAGCCGAATCACTTTGGTA...

XM_057943702.1
TAAATTAAAGTCCCAAATAATGCGTTAGTCATCTACAGGTGCGCAATGTAACACGGTGCACATTTTAGCAACAAGCAGCGAGTAATTTCTGAAATAATATCGATATTGTCCTCGTCTTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCACATTTTGGATCAATTTATGCGCGCTCTCCAATCGGCGCCCAGATTAACAACAGAAAAGAGGAGTTGAGGAGTGTGTGTTTTTGTCGTTTTAATTAA...

CDS

3 records

下载 CDS FASTA

LOC131015336
ATGGCACTGAGGCGCCTCATCAATCAGGTCAGAAGACAGGAGTCTCAGTTGAGGCAGCTGAGCAATTTGGCTGCTCGACCGTATCGAGCTTCCCCTTACACTAGGGGAGGAGTGCACAAGCTTTTGAGTCCCTTGGGAACAAGTACCTTAGGAAAGCCGAATCACTTTGGTAGTTTAGCTCGTAGATTGCGTGAATCAGAGAGATCAATTGATGCGGCATATCTTAAAGAGCTCTCTCGCCGAAATGATCCAGAGGAAGT...

LOC131015336
ATGGCACTGAGGCGCCTCATGAATCAGGTCAGAAGACAGGAGTCTCAGTTGAGGCAGCTGAGCAATTTGGCTGCTCGACCGTATCGAGCTTCCCCTTACACTAGGGGAGGAGTGCACAAGCTTTTGAGTCCCTTGGGAACAAGTACCTTAGGAAAGCCGAATCACTTTGGTAGTTTAGCTCGTAGATTGCGTGAATCAGAGAGATCAATTGATGCGGCATATCTTAAAGAGCTCTCTCGCCGAAATGATCCAGAGGAAGT...

Protein

3 records

下载 Protein FASTA

XP_057799683.1
MALRRLMNQVRRQESQLRQLSNLAARPYRASPYTRGGVHKLLSPLGTSTLGKPNHFGSLARRLRESERSIDAAYLKELSRRNDPEEVVRLFESHPSLHANPSALAEYVKALVRLDKLDESELFRALRRGATNSLVDEESVGALSAFRNVGKSSKDGILGTASAPIHMVTAEGGHFKEQIWRTIRSLGVVFLLMSGFGALIEDRGIGKAGLGLHEEVRPIMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLP...

XP_057799684.1
MALRRLINQVRRQESQLRQLSNLAARPYRASPYTRGGVHKLLSPLGTSTLGKPNHFGSLARRLRESERSIDAAYLKELSRRNDPEEVVRLFESHPSLHANPSALAEYVKALVRLDKLDESELFRALRRGATNSLVDEESVGALSAFRNVGKSSKDGILGTASAPIHMVTAEGGHFKEQIWRTIRSLGVVFLLMSGFGALIEDRGIGKAGLGLHEEVRPIMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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