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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004615

染色体: Chr03 坐标: 63860657-63864305 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004615
名称SmilChr03G004615
描述uncharacterized SmilChr03G004615
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向63860657 - 63864305 / +

ID 对照

NCBI Gene IDLOC131015428
GeneID131015428
locus_tag-
NCBI NameLOC131015428
原始查询SmilChr03G004615

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831064]; symbol=AT5G11910; hit=AT5G11910; species=arabidopsis; confidence=high
产物alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831064]; symbol=AT5G11910; hit=AT5G11910; species=arabidopsis; confidence=high
ArabidopsisAT5G11910 (AT5G11910)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831064]
identity=65.2; qcov=0.966; evalue=3.77e-122; confidence=high
RiceOs05g0539500 (OsPOP10)
-
identity=56.3; qcov=0.985; evalue=1.06e-104; confidence=high
GO-
KEGG-
PfamPF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro-
eggNOG-
NRGeneID:131015428

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057799809.1
2 Cytosol 细胞质基质 1.00000 XP_057799809.1
3 Mitochondrion 线粒体 0.40000 XP_057799807.1
4 Peroxisome 过氧化物酶体 0.20000 XP_057799807.1
5 Nucleus 细胞核 0.20000 XP_057799809.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:63862192 TG T 1bp_deletion CDS_variant 1 A25
Chr3:63862913 G A EMS_canonical_SNV CDS_variant 1 B28
Chr3:63862919 G A EMS_canonical_SNV CDS_variant 1 B89
Chr3:63862923 G A EMS_canonical_SNV CDS_variant 1 C80
Chr3:63862930 G A EMS_canonical_SNV CDS_variant 1 B89
Chr3:63863077 G A EMS_canonical_SNV CDS_variant 1 B99
Chr3:63863102 C T EMS_canonical_SNV CDS_variant 1 B121
Chr3:63863113 G A EMS_canonical_SNV CDS_variant 2 B99,D11
Chr3:63863126 C T EMS_canonical_SNV CDS_variant 4 A22,A24,B54,B66
Chr3:63863153 C T EMS_canonical_SNV CDS_variant 2 B99,D11
Chr3:63863294 C T EMS_canonical_SNV CDS_variant 2 B99,D11
Chr3:63863309 C T EMS_canonical_SNV CDS_variant 1 B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799807.1
293 aa
N
1
146
293
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
C
PF12146 Hydrolase_4 28-137 aa PF00561 Abhydrolase_1 29-154 aa PF12697 Abhydrolase_6 30-271 aa
XP_057799808.1
293 aa
N
1
146
293
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
C
PF12146 Hydrolase_4 28-137 aa PF00561 Abhydrolase_1 29-154 aa PF12697 Abhydrolase_6 30-271 aa
XP_057799809.1
265 aa
N
1
132
265
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
Peptidase_S9
C
PF12146 Hydrolase_4 28-141 aa PF00561 Abhydrolase_1 29-131 aa PF12697 Abhydrolase_6 30-243 aa PF00326 Peptidase_S9 80-253 aa
XP_057799810.1
265 aa
N
1
132
265
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
Peptidase_S9
C
PF12146 Hydrolase_4 28-141 aa PF00561 Abhydrolase_1 29-131 aa PF12697 Abhydrolase_6 30-243 aa PF00326 Peptidase_S9 80-253 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799807.1 Pfam PF12146 Hydrolase_4 Domain 28 137 1.4e-17 64.6 Serine aminopeptidase, S33
XP_057799807.1 Pfam PF00561 Abhydrolase_1 Domain 29 154 5.2e-10 40.1 alpha/beta hydrolase fold
XP_057799807.1 Pfam PF12697 Abhydrolase_6 Domain 30 271 5.5e-08 34.4 Alpha/beta hydrolase family
XP_057799808.1 Pfam PF12146 Hydrolase_4 Domain 28 137 1.4e-17 64.6 Serine aminopeptidase, S33
XP_057799808.1 Pfam PF00561 Abhydrolase_1 Domain 29 154 5.2e-10 40.1 alpha/beta hydrolase fold
XP_057799808.1 Pfam PF12697 Abhydrolase_6 Domain 30 271 5.5e-08 34.4 Alpha/beta hydrolase family
XP_057799809.1 Pfam PF12146 Hydrolase_4 Domain 28 141 6.1e-18 65.7 Serine aminopeptidase, S33
XP_057799809.1 Pfam PF00561 Abhydrolase_1 Domain 29 131 3.1e-10 40.9 alpha/beta hydrolase fold
XP_057799809.1 Pfam PF12697 Abhydrolase_6 Domain 30 243 8.6e-08 33.8 Alpha/beta hydrolase family
XP_057799809.1 Pfam PF00326 Peptidase_S9 Domain 80 253 1.4e-07 32.0 Prolyl oligopeptidase family
XP_057799810.1 Pfam PF12146 Hydrolase_4 Domain 28 141 6.1e-18 65.7 Serine aminopeptidase, S33
XP_057799810.1 Pfam PF00561 Abhydrolase_1 Domain 29 131 3.1e-10 40.9 alpha/beta hydrolase fold
XP_057799810.1 Pfam PF12697 Abhydrolase_6 Domain 30 243 8.6e-08 33.8 Alpha/beta hydrolase family
XP_057799810.1 Pfam PF00326 Peptidase_S9 Domain 80 253 1.4e-07 32.0 Prolyl oligopeptidase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057943825.1
ATTGAAAATATTTTATATAATAAAATTATGAATTGTCTAGCTGCGCCCCTAGTCAGATGAATGACTTCAGATTATATTTTTAGAGCTATAAATTTATTTTCTCCAAAAGACCATGGATAAAATTTATTTTTGTTAAGCCTTGATTAATTTTTATTATTGGGCTAAAAATATAATATGAGCCCATCACATGTTGGTAGATTATCATTTATCAGCATTTATTCTTCTTTTCTTAACCTTTTTATTTTATTTTTAATTTCTCT...
XM_057943826.1
ATTGAAAATATTTTATATAATAAAATTATGAATTGTCTAGCTGCGCCCCTAGTCAGATGAATGACTTCAGATTATATTTTTAGAGCTATAAATTTATTTTCTCCAAAAGACCATGGATAAAATTTATTTTTGTTAAGCCTTGATTAATTTTTATTATTGGGCTAAAAATATAATATGAGCCCATCACATGTTGGTAGATTATCATTTATCAGCATTTATTCTTCTTTTCTTAACCTTTTTATTTTATTTTTAATTTCTCT...

CDS

4 records

下载 CDS FASTA
LOC131015428
ATGGTGGAGAACAAGAGAGTGTATATAGAGAACAGCCATGGCGAGAAGCTAGTCGGGATACTGCACGAGACGGGGTCGAGTGAGCTCGTAGTTGTATGCCATGGATTCCGGTCCACAAAGGATCGTATTCCCATGTCGAACATTGCTCTCGCCTTCGAGAGGGAGGGAATCAGCGCCTTTCGCTTTGATTTTGCTGGCAACGGGGAAAGCGAAGGTTCGTTCCAATATGGCAATTACCGTAGAGAGGCTGAAGATCTACG...
LOC131015428
ATGGTGGAGAACAAGAGAGTGTATATAGAGAACAGCCATGGCGAGAAGCTAGTCGGGATACTGCACGAGACGGGGTCGAGTGAGCTCGTAGTTGTATGCCATGGATTCCGGTCCACAAAGGATCGTATTCCCATGTCGAACATTGCTCTCGCCTTCGAGAGGGAGGGAATCAGCGCCTTTCGCTTTGATTTTGCTGGCAACGGGGAAAGCGAAGGTTCGTTCCAATATGGCAATTACCGTAGAGAGGCTGAAGATCTACG...

Protein

4 records

下载 Protein FASTA
XP_057799807.1
MVENKRVYIENSHGEKLVGILHETGSSELVVVCHGFRSTKDRIPMSNIALAFEREGISAFRFDFAGNGESEGSFQYGNYRREAEDLRAVVEHFKANQRCIVAVVGHSKGGNVVLLYASKYNDVQTVINIAGRFDLRRGIEGRLGKDFREKIKQYGFIDVRNRRGSNVCLNHFLSYVVSRVGLGSCIYGRVVGKIEYQVTEASLKDRLETDPRAACRSIPSNCSVLTVHGTLDEMVLVDDATEFAKNIRNHDLCIVEGADH...
XP_057799808.1
MVENKRVYIENSHGEKLVGILHETGSSELVVVCHGFRSTKDRIPMSNIALAFEREGISAFRFDFAGNGESEGSFQYGNYRREAEDLRAVVEHFKANQRCIVAVVGHSKGGNVVLLYASKYNDVQTVINIAGRFDLRRGIEGRLGKDFREKIKQYGFIDVRNRRGSNVCLNHFLSYVVSRVGLGSCIYGRVVGKIEYQVTEASLKDRLETDPRAACRSIPSNCSVLTVHGTLDEMVLVDDATEFAKNIRNHDLCIVEGADH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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