当前解析结果
SmilChr03G004629| 统一新 Gene ID | SmilChr03G004629 |
|---|---|
| 名称 | SmilChr03G004629 |
| 描述 | uncharacterized SmilChr03G004629 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63940784 - 63944777 / - |
| NCBI Gene ID | LOC131015361 |
|---|---|
| GeneID | 131015361 |
| locus_tag | - |
| NCBI Name | LOC131015361 |
| 原始查询 | SmilChr03G004629 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817160]; symbol=AT2G26200; hit=AT2G26200; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817160]; symbol=AT2G26200; hit=AT2G26200; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G26200 (AT2G26200)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817160] identity=62.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0414200- identity=31.5; qcov=0.457; evalue=1.76e-28; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF10294 (Methyltransf_16); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015361 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799719.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057799719.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057799719.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799719.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799719.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63941023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B30,C28 |
Chr3:63941026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C37 |
Chr3:63941034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,A9,B71,C57,C77 |
Chr3:63941056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:63941128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:63941191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr3:63941212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B11,B32,B91 |
Chr3:63941215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr3:63941238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr3:63941322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr3:63941367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr3:63941374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799719.1PF13489
Methyltransf_23 72-240 aa
PF13847
Methyltransf_31 79-208 aa
PF13649
Methyltransf_25 82-182 aa
PF08242
Methyltransf_12 83-184 aa
PF08241
Methyltransf_11 83-186 aa
PF10294
Methyltransf_16 340-478 aa
XP_057799720.1PF13489
Methyltransf_23 72-240 aa
PF13847
Methyltransf_31 79-208 aa
PF13649
Methyltransf_25 82-182 aa
PF08242
Methyltransf_12 83-184 aa
PF08241
Methyltransf_11 83-186 aa
PF10294
Methyltransf_16 340-478 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799719.1 |
Pfam | PF13489 |
Methyltransf_23 | Domain | 72 | 240 | 7.3e-16 | 59.0 | Methyltransferase domain |
XP_057799719.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 79 | 208 | 2.9e-17 | 63.6 | Methyltransferase domain |
XP_057799719.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 82 | 182 | 2.3e-19 | 70.6 | Methyltransferase domain |
XP_057799719.1 |
Pfam | PF08242 |
Methyltransf_12 | Domain | 83 | 184 | 8.9e-22 | 78.4 | Methyltransferase domain |
XP_057799719.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 83 | 186 | 7.9e-15 | 56.0 | Methyltransferase domain |
XP_057799719.1 |
Pfam | PF10294 |
Methyltransf_16 | Family | 340 | 478 | 1.7e-17 | 64.5 | Lysine methyltransferase |
XP_057799720.1 |
Pfam | PF13489 |
Methyltransf_23 | Domain | 72 | 240 | 7.3e-16 | 59.0 | Methyltransferase domain |
XP_057799720.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 79 | 208 | 2.9e-17 | 63.6 | Methyltransferase domain |
XP_057799720.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 82 | 182 | 2.3e-19 | 70.6 | Methyltransferase domain |
XP_057799720.1 |
Pfam | PF08242 |
Methyltransf_12 | Domain | 83 | 184 | 8.9e-22 | 78.4 | Methyltransferase domain |
XP_057799720.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 83 | 186 | 7.9e-15 | 56.0 | Methyltransferase domain |
XP_057799720.1 |
Pfam | PF10294 |
Methyltransf_16 | Family | 340 | 478 | 1.7e-17 | 64.5 | Lysine methyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。