Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004635`

染色体: Chr03 坐标: 63971211-63972748 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004635`
名称	SmilChr03G004635
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63971211 - 63972748 / `-`

ID 对照

NCBI Gene ID	`LOC131015399`
GeneID	`131015399`
locus_tag	`-`
NCBI Name	`LOC131015399`
原始查询	`SmilChr03G004635`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=26.7; qcov=0.987; evalue=1.29e-19; confidence=low
Rice	`Os09g0447600` - identity=32.5; qcov=0.495; evalue=9.95e-21; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131015399

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057799763.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799763.1`
3	Cytosol	细胞质基质	0.20000	`XP_057799763.1`
4	Chromosome	染色体	0.00000	`XP_057799763.1`
5	Centromere	着丝粒	0.00000	`XP_057799763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63971696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr3:63971750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:63971955`	`G`	`GGC`	2bp_insertion	frameshift_variant	16	A1,A15,A22,B100,B12,B122,B16,B17,B2,B55,B71,B80,C45,C5,C8,C84
`Chr3:63971960`	`A`	`AAT`	2bp_insertion	frameshift_variant	1	B15
`Chr3:63971960`	`A`	`AAT`	2bp_insertion	CDS_variant	1	B15
`Chr3:63971963`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	B15
`Chr3:63971963`	`ATT`	`A`	2bp_deletion	CDS_variant	1	B15
`Chr3:63971972`	`A`	`AT`	1bp_insertion	frameshift_variant	86	A1,A10,A14,A15,A16,A18,A22,A9,B1,B100,B101,B104,B107,B110,B111,B115,B12,B120,B121,B122,B123,B130,B131,B133,B134,B137,B140,B15,B16,B17,B2,B20,B30,B34,B36,B37,B44,B46,B48,B55,B62,B65,B68,B71,B72,B78,B80,B85,B86,B90,B91,B92,B93,B94,B98,C13,C17,C2,C20,C23,C32,C33,C4,C45,C5,C57,C59,C62,C64,C66,C68,C7,C70,C76,C77,C8,C80,C82,C84,C85,C9,D2,D3,D4,D5,D7
`Chr3:63971980`	`T`	`TA`	1bp_insertion	frameshift_variant	14	A1,A15,A22,B100,B12,B16,B17,B2,B55,B71,B80,C45,C5,C84
`Chr3:63971984`	`C`	`CAA`	2bp_insertion	frameshift_variant	12	A1,A15,B100,B12,B16,B17,B2,B55,B71,B80,C45,C84
`Chr3:63972045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B37,B49,B66
`Chr3:63972157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799763.1

380 aa

190

380

F-box-like

F-box

FBA_3

FBA_1

PF12937 F-box-like 17-51 aa PF00646 F-box 17-54 aa PF08268 FBA_3 81-362 aa PF07734 FBA_1 110-377 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799763.1`	Pfam	`PF12937`	F-box-like	Domain	17	51	9e-09	35.7	F-box-like
`XP_057799763.1`	Pfam	`PF00646`	F-box	Domain	17	54	2.4e-11	43.8	F-box domain
`XP_057799763.1`	Pfam	`PF08268`	FBA_3	Repeat	81	362	4.3e-17	62.8	F-box associated beta propeller domain
`XP_057799763.1`	Pfam	`PF07734`	FBA_1	Repeat	110	377	2.8e-21	76.6	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943780.1
TCTTCTTTTCCACGATTTCTTCTTCTTCTTCTTCACGATTTCTAATTCTAAACCAGTGCTAGCCGTTTCACTCAAATCCGCGTATCTTAAACCCTACCCCTCTCTCTCTCAATGGCAAAATCTCAGGGAAGAAGCGTCTCCCTCAACACTGAAATCGTGCTACCAGACGACGTTATCATCGAGATTCTCACCTGGCTCCCAGTGAAATCCCTCTTGAAATTCAAATGCGTCTGCAGATCATGGCGAGCCCTAATTTCCAG...

CDS

1 records

下载 CDS FASTA

LOC131015399
ATGGCAAAATCTCAGGGAAGAAGCGTCTCCCTCAACACTGAAATCGTGCTACCAGACGACGTTATCATCGAGATTCTCACCTGGCTCCCAGTGAAATCCCTCTTGAAATTCAAATGCGTCTGCAGATCATGGCGAGCCCTAATTTCCAGCCGGCGCTTCATCAAAGCCCAACTCGAAAACTCAAAATCAGCCCCAAATTTAGCCCGCGAAATGCTCGCTATTGATTCAGGTATAAGATCAGATAAACTTAAGGTGTGTTC...

Protein

1 records

下载 Protein FASTA

XP_057799763.1
MAKSQGRSVSLNTEIVLPDDVIIEILTWLPVKSLLKFKCVCRSWRALISSRRFIKAQLENSKSAPNLAREMLAIDSGIRSDKLKVCSVNSMLYESAPQVFDVSYPLDLGSCCMMVACCDGLLLLRSKKREMILWNPSTRTWKTLPHFDLKFNIPEFDLGYDKSSDDYKVVGFPDDPETIVIVYSLRNDEWKRIKDINGQAIPYGALANGKLYCFIEPLFIDDWENFEPEAELIYDWEILSLDLEKEEIEILQMPSFVKVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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