当前解析结果
SmilChr03G004636| 统一新 Gene ID | SmilChr03G004636 |
|---|---|
| 名称 | SmilChr03G004636 |
| 描述 | uncharacterized SmilChr03G004636 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63976050 - 63982362 / + |
| NCBI Gene ID | LOC131015366 |
|---|---|
| GeneID | 131015366 |
| locus_tag | - |
| NCBI Name | LOC131015366 |
| 原始查询 | SmilChr03G004636 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445]; symbol=AT4G33080; hit=AT4G33080; species=arabidopsis; confidence=high |
| 产物 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445]; symbol=AT4G33080; hit=AT4G33080; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G33080 (AT4G33080)AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445] identity=78.6; qcov=0.998; evalue=0; confidence=high |
| Rice | Os01g0186700- identity=80.9; qcov=0.918; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00433 (Pkinase_C); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015366 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799726.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057799726.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057799726.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799726.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799726.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63976308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B140,C44,C52,C8 |
Chr3:63978356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr3:63978542 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | A13 |
Chr3:63978542 |
G |
GT |
1bp_insertion | CDS_variant | 1 | A13 |
Chr3:63978557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:63978799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr3:63978883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B78,C8 |
Chr3:63979826 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C12 |
Chr3:63979826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr3:63979871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B90,B92 |
Chr3:63980337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B36,B90 |
Chr3:63980445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799726.1PF00069
Pkinase 94-243 aa
PF07714
PK_Tyr_Ser-Thr 95-247 aa
PF03109
ABC1 167-245 aa
PF00069
Pkinase 291-400 aa
PF00433
Pkinase_C 419-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799726.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 243 | 2.8e-68 | 230.9 | Protein kinase domain |
XP_057799726.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 95 | 247 | 1.2e-29 | 104.1 | Protein tyrosine and serine/threonine kinase |
XP_057799726.1 |
Pfam | PF03109 |
ABC1 | Domain | 167 | 245 | 6.6e-07 | 29.5 | ABC1 atypical kinase-like domain |
XP_057799726.1 |
Pfam | PF00069 |
Pkinase | Domain | 291 | 400 | 2.8e-68 | 230.9 | Protein kinase domain |
XP_057799726.1 |
Pfam | PF00433 |
Pkinase_C | Family | 419 | 464 | 1.6e-05 | 26.2 | Protein kinase C terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。