Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004639`

染色体: Chr03 坐标: 63990142-63993226 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004639`
名称	SmilChr03G004639
描述	protein phosphatase 2C 50-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63990142 - 63993226 / `+`

ID 对照

NCBI Gene ID	`LOC131015362`
GeneID	`131015362`
locus_tag	`-`
NCBI Name	`LOC131015362`
原始查询	`SmilChr03G004639`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein phosphatase 2C 50-like
产物	protein phosphatase 2C 50-like
Arabidopsis	`AT1G72770` (HAB1) HYPERSENSITIVE TO ABA1 [Source:NCBI gene (formerly Entrezgene);Acc:843609] identity=57.2; qcov=0.786; evalue=1.31e-160; confidence=high
Rice	`Os01g0583100` (OsPP2C06/OsABI2) - identity=65.7; qcov=0.614; evalue=2.39e-151; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00481 (PP2C)
InterPro	-
eggNOG	-
NR	GeneID:131015362

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799721.1`
2	Cytosol	细胞质基质	0.80000	`XP_057799721.1`
3	Cytoplasm	细胞质	0.60000	`XP_057799721.1`
4	Chromosome	染色体	0.00000	`XP_057799721.1`
5	Centromere	着丝粒	0.00000	`XP_057799721.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63991174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:63991286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:63991617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B72,C12,C80,C87
`Chr3:63991703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr3:63991765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:63991805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:63991807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,A9,B82
`Chr3:63991915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr3:63991917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr3:63991926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr3:63992231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:63992270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,B45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799721.1

541 aa

270

541

PP2C

PF00481 PP2C 238-524 aa

XP_057799722.1

541 aa

270

541

PP2C

PF00481 PP2C 238-524 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799721.1`	Pfam	`PF00481`	PP2C	Family	238	524	4.6e-61	207.4	Protein phosphatase 2C
`XP_057799722.1`	Pfam	`PF00481`	PP2C	Family	238	524	4.6e-61	207.4	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943739.1
GTATTTCTTGCATTCTTTTTTGTTTCTTTAATCATTTTCACACACCCACTCCAGTGACTCCACTGACTTTTCTCTGTGAATTCACAAACTATAAAAAAGGAAAGATTTTTATAATGATATTTTTCAAAATTTGGAGAACCCATATTTTTTTGGCTGGGTTCTTGATTTGTCAGCAGATGTTCAAGATGGTGAGAGGAGGGAAACTATTACAGTGAGAAATAGCTTTGACAGATCTAGCAAGTAACTTGTAATTTATAAGC...

XM_057943738.1
TATTTTATTTATTATGCTATTACCAATTTCTTGATACTACTATACTGCTGCAAATAAAAGTAATTATTGGTTGAAAGGGAGAGTTAGACTAAATAAAGTAGCTCAAGATTTGAATAAAGGGTTGACATAGATTGCCTCAGATCCAGTGTACTCAAAGTCGTCTTGTTGAGAAAAAAAGTTTGCCTTTTATTTCAGGGTTTTCTTGTGATTCTTGAAACTTTTGCTCTGCTTTTCCCCCTTGTTTCTCTCTCATCAACCAT...

CDS

2 records

下载 CDS FASTA

LOC131015362
ATGGAGGCGAGGCGTGGGGCGGTTGCAGTGCCATATAGTTTAGGTAACTTGATTCTTGACTATCCTAGTGTGGGGTGCTGCTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGCGTGGATGAGATGAACTTGAAGTTGATGGGAGACGACGAGGCTAGCGTGCTCCCGGATGGGGAGACGAAGAGCTTGGGCAACTCTGTGGATGGTGAGAATGATGATTGTAGCTTTGGTGATTCAGGGAG...

Protein

2 records

下载 Protein FASTA

XP_057799721.1
MEARRGAVAVPYSLGNLILDYPSVGCCCCCCRCCCCCCCCCYCCVDEMNLKLMGDDEASVLPDGETKSLGNSVDGENDDCSFGDSGSDVSFSVALGSGEGEARSEGSSLLAMTSEDETMWLAREEDGSSSLEGDAMPDSLEVVSDTSSLCGDDFLGFEANFLEVERELASRIRVSRSPGSDAVLGDSPSVSVASREGDVAVSESSKAGDAQSERGLCGRVSRSIFEVDCVPLWGFTSVCGRRPEMEDAVAALPRLLKIPI...

XP_057799722.1
MEARRGAVAVPYSLGNLILDYPSVGCCCCCCRCCCCCCCCCYCCVDEMNLKLMGDDEASVLPDGETKSLGNSVDGENDDCSFGDSGSDVSFSVALGSGEGEARSEGSSLLAMTSEDETMWLAREEDGSSSLEGDAMPDSLEVVSDTSSLCGDDFLGFEANFLEVERELASRIRVSRSPGSDAVLGDSPSVSVASREGDVAVSESSKAGDAQSERGLCGRVSRSIFEVDCVPLWGFTSVCGRRPEMEDAVAALPRLLKIPI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器