Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004644`

染色体: Chr03 坐标: 64012700-64016917 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004644`
名称	SmilChr03G004644
描述	25S rRNA (cytosine-C(5))-methyltransferase NSUN5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64012700 - 64016917 / `+`

ID 对照

NCBI Gene ID	`LOC131015377`
GeneID	`131015377`
locus_tag	`-`
NCBI Name	`LOC131015377`
原始查询	`SmilChr03G004644`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	25S rRNA (cytosine-C(5))-methyltransferase NSUN5
产物	25S rRNA (cytosine-C(5))-methyltransferase NSUN5
Arabidopsis	`AT5G26180` (AT5G26180) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832687] identity=63; qcov=0.977; evalue=0; confidence=high
Rice	`Os02g0217800` - identity=62.7; qcov=0.857; evalue=0; confidence=high
GO	GO:0005730 (nucleolus); GO:0008168 (methyltransferase activity); GO:0070475 (rRNA base methylation)
KEGG	-
Pfam	PF01189 (Methyltr_RsmB-F); PF21148 (NSUN5_fdxn-like); PF21153 (NSUN5_N)
InterPro	-
eggNOG	-
NR	GeneID:131015377

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799741.1`
2	Nucleolus	核仁	1.00000	`XP_057799741.1`
3	Chromosome	染色体	0.00000	`XP_057799741.1`
4	Centromere	着丝粒	0.00000	`XP_057799741.1`
5	Chromatin	染色质	0.00000	`XP_057799741.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64013034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr3:64014099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:64014376`	`T`	`TC`	1bp_insertion	frameshift_variant	44	A13,A23,A3,A8,B1,B100,B101,B109,B110,B113,B117,B119,B120,B122,B124,B126,B128,B134,B139,B20,B4,B48,B71,B75,B95,B96,B98,B99,C24,C36,C4,C43,C5,C56,C58,C59,C6,C60,C65,C81,C82,D11,D2,D9
`Chr3:64014388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:64014418`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C33
`Chr3:64014418`	`C`	`CA`	1bp_insertion	CDS_variant	1	C33
`Chr3:64014445`	`TAA`	`T`	2bp_deletion	frameshift_variant	6	B2,B86,B97,C3,C4,C46
`Chr3:64014501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B38,C34,C48
`Chr3:64014633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B58,C86
`Chr3:64014661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:64014665`	`ATC`	`A`	2bp_deletion	frameshift_variant	215	A1,A10,A11,A14,A15,A16,A18,A19,A2,A20,A21,A22,A24,A25,A3,A4,A5,A6,A7,A9,B10,B100,B101,B102,B103,B105,B107,B108,B109,B110,B111,B112,B113,B118,B119,B12,B120,B121,B123,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B14,B15,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B34,B35,B36,B37,B38,B39,B40,B41,B42,B44,B45,B46,B47,B48,B49,B5,B50,B51,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B93,B94,B96,B98,B99,C10,C11,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C30,C32,C33,C34,C35,C36,C37,C38,C39,C40,C41,C42,C43,C44,C46,C47,C48,C49,C50,C51,C52,C55,C56,C57,C58,C6,C60,C61,C62,C64,C66,C67,C68,C69,C7,C70,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C9,D1,D2,D3,D5,D6,D7,D8,D9
`Chr3:64014677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799741.1

476 aa

238

476

NSUN5_N

NSUN5_fdxn-like

Methyltr_RsmB-F

PF21153 NSUN5_N 71-157 aa PF21148 NSUN5_fdxn-like 195-226 aa PF01189 Methyltr_RsmB-F 235-443 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799741.1`	Pfam	`PF21153`	NSUN5_N	Domain	71	157	6e-15	56.3	NOL1/NOP2/Sun domain family member 5, N-terminal domain
`XP_057799741.1`	Pfam	`PF21148`	NSUN5_fdxn-like	Domain	195	226	2.6e-13	50.9	NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain
`XP_057799741.1`	Pfam	`PF01189`	Methyltr_RsmB-F	Domain	235	443	6.1e-27	95.3	16S rRNA methyltransferase RsmB/F

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943758.1
AAAATCGCTAATTCCCCAAAAATATTTCAGAAACAGCAATTTCAGCAGAAACAAAACCCTAAACCCCGACAAAATTAAACAGAGAGCCATGGCGCGGAGGAAGCCGGTAACTGCAAACGCATCGGCGGGGAAGGATCGGAAGCCGGAGGCGAAGCGGCAGAGCAACTCCGAACGGTCGGCTTACTTCGCCCGGAGAGAAGCCGCTAAAGTGCTGCGCAGCGCGCTTCAGGGCGATGCTCGGCGGCGAGCCGTCGGGTCAA...

CDS

1 records

下载 CDS FASTA

LOC131015377
ATGGCGCGGAGGAAGCCGGTAACTGCAAACGCATCGGCGGGGAAGGATCGGAAGCCGGAGGCGAAGCGGCAGAGCAACTCCGAACGGTCGGCTTACTTCGCCCGGAGAGAAGCCGCTAAAGTGCTGCGCAGCGCGCTTCAGGGCGATGCTCGGCGGCGAGCCGTCGGGTCAATTAAGTCGCTCGTTTATAGCCCTACCGTCAGGAACAAGAAGGCTACATTTGCGTTGGTTTGCGAAACTCTCAAGCATCTCTCAGTTAT...

Protein

1 records

下载 Protein FASTA

XP_057799741.1
MARRKPVTANASAGKDRKPEAKRQSNSERSAYFARREAAKVLRSALQGDARRRAVGSIKSLVYSPTVRNKKATFALVCETLKHLSVIKEVMEEADVVNSKWKKQNELLYIITYDLLFGQQDLLTGDAEKHLMSKKDALQSALSRILRRKGLKNVKDLMALDKTAELQKPRYVRVNTLKIDTESVISELRQQFSVQEDDTVPDLLVLPPGADLHNHPLVKNGSVFLQGKASSMPAVALDPKPGWRVIDACAAPGNKTVHLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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