Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004647`

染色体: Chr03 坐标: 64020398-64023133 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004647`
名称	SmilChr03G004647
描述	ankyrin repeat-containing protein BDA1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64020398 - 64023133 / `-`

ID 对照

NCBI Gene ID	`LOC131015376`
GeneID	`131015376`
locus_tag	`-`
NCBI Name	`LOC131015376`
原始查询	`SmilChr03G004647`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein BDA1-like
产物	ankyrin repeat-containing protein BDA1-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=31.4; qcov=0.75; evalue=2.33e-43; confidence=low
Rice	`Os11g0182900` - identity=27.6; qcov=0.891; evalue=9.33e-31; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:131015376

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799740.1`
2	Nucleus	细胞核	0.00000	`XP_057799740.1`
3	Chromosome	染色体	0.00000	`XP_057799740.1`
4	Centromere	着丝粒	0.00000	`XP_057799740.1`
5	Chromatin	染色质	0.00000	`XP_057799740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64020516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B58,B77,C14,C70,D1
`Chr3:64020564`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B35
`Chr3:64020564`	`T`	`TC`	1bp_insertion	CDS_variant	1	B35
`Chr3:64020628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:64020638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:64020644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B57,B68,B86,C46,C74
`Chr3:64020701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B118,B22,C19
`Chr3:64020749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:64020801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr3:64020809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,C18
`Chr3:64020860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B99
`Chr3:64020902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799740.1

476 aa

238

476

Ank_2

Ank

Ank_4

Ank

Ank_2

Ank_5

Ank

Ank_3

PGG

PF12796 Ank_2 26-115 aa PF00023 Ank 61-84 aa PF13637 Ank_4 63-110 aa PF00023 Ank 92-116 aa PF00023 Ank 127-151 aa PF12796 Ank_2 165-243 aa PF13857 Ank_5 184-238 aa PF00023 Ank 198-221 aa PF13606 Ank_3 198-221 aa PF13962 PGG 288-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799740.1`	Pfam	`PF12796`	Ank_2	Repeat	26	115	1.1e-27	97.1	Ankyrin repeats (3 copies)
`XP_057799740.1`	Pfam	`PF00023`	Ank	Repeat	61	84	2.9e-26	90.8	Ankyrin repeat
`XP_057799740.1`	Pfam	`PF13637`	Ank_4	Repeat	63	110	9.3e-20	71.0	Ankyrin repeats (many copies)
`XP_057799740.1`	Pfam	`PF00023`	Ank	Repeat	92	116	2.9e-26	90.8	Ankyrin repeat
`XP_057799740.1`	Pfam	`PF00023`	Ank	Repeat	127	151	2.9e-26	90.8	Ankyrin repeat
`XP_057799740.1`	Pfam	`PF12796`	Ank_2	Repeat	165	243	1.1e-27	97.1	Ankyrin repeats (3 copies)
`XP_057799740.1`	Pfam	`PF13857`	Ank_5	Repeat	184	238	1.2e-22	80.4	Ankyrin repeats (many copies)
`XP_057799740.1`	Pfam	`PF00023`	Ank	Repeat	198	221	2.9e-26	90.8	Ankyrin repeat
`XP_057799740.1`	Pfam	`PF13606`	Ank_3	Repeat	198	221	2.9e-21	73.7	Ankyrin repeat
`XP_057799740.1`	Pfam	`PF13962`	PGG	Domain	288	408	9.3e-23	81.0	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943757.1
GTTCATACAAGCAAAGCATCGAACAGTTTGTGAGCAATTTCGTAGAGCCTCAGATTTTCCAATTTTGAATTCGTCGCACGTTTTCTAGATGCAGAATATTATAATTATTTTCCTCTTATTGGAAATAATCAATTAAGAGGTTATTATACAAGAATTATTGTAATTAATTTATATTCTGCGTAGCGTTGACTCTACTCTCTACAGTCCTAATTGGCTCAAAGGGAACAAAATTCCCCAAAAATTGTCACAGCGCAATCGAA...

CDS

1 records

下载 CDS FASTA

LOC131015376
ATGGAGCTTCTGAGATTGTTAGATCAGAATAAACAAGAAGAAGATGATCAGAAGAATCAGATTCAGCTCAAAAACCTTCACGAAGCAGCAATAAACGGATCGGTGCAGCTCCTATCGCAAATCCTGAAGGAAAATCCCCAAATCCTCCGATCGCCGGAGATCTCTTCCGCGCCGGAAATTAACCCCCTCCACGCGGCGGCGCTCCTAGGCCACCTCGAATTCGCGAGGAAGCTGCTCAGCGCGAACCCCGAGCTGTCGAA...

Protein

1 records

下载 Protein FASTA

XP_057799740.1
MELLRLLDQNKQEEDDQKNQIQLKNLHEAAINGSVQLLSQILKENPQILRSPEISSAPEINPLHAAALLGHLEFARKLLSANPELSKSLDSNGSSALHLAAAKGNAKMVRELISADSSMCGVRDGEGRIPLHLAAIKGRAAVMEELLKAEPAAAAAVTGGGESCLHLCVKYNRVEAMKEILRCLEGGDDRLVDWKDQNGNTVLHLAVAKKQIEIVEYLLNNTRIEKEARNANGLTALDALLQSPGDLRDLEIKQCLINHQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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