Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004651

染色体: Chr03 坐标: 64045244-64047295 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004651
名称SmilChr03G004651
描述uncharacterized SmilChr03G004651
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向64045244 - 64047295 / -

ID 对照

NCBI Gene IDLOC131015405
GeneID131015405
locus_tag-
NCBI NameLOC131015405
原始查询SmilChr03G004651

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826815]; symbol=AT4G12070; hit=AT4G12070; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826815]; symbol=AT4G12070; hit=AT4G12070; species=arabidopsis; confidence=low
ArabidopsisAT4G12070 (AT4G12070)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826815]
identity=30.1; qcov=1.1; evalue=3.26e-40; confidence=low
RiceOs02g0717600
-
identity=27.2; qcov=1.22; evalue=1.18e-33; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131015405

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057799770.1
2 Cytoplasm 细胞质 0.80000 XP_057799770.1
3 Nucleus 细胞核 0.20000 XP_057799770.1
4 Nucleoplasm 核质 0.20000 XP_057799770.1
5 Chromosome 染色体 0.00000 XP_057799770.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:64045528 C T EMS_canonical_SNV CDS_variant 2 B106,B45
Chr3:64045529 C T EMS_canonical_SNV CDS_variant 2 C8,D11
Chr3:64045580 C T EMS_canonical_SNV CDS_variant 1 B19
Chr3:64045632 C T EMS_canonical_SNV CDS_variant 1 C29
Chr3:64045646 C T EMS_canonical_SNV CDS_variant 2 C13,C36
Chr3:64045655 C T EMS_canonical_SNV CDS_variant 1 D11
Chr3:64045697 C T EMS_canonical_SNV CDS_variant 1 D10
Chr3:64045822 G A EMS_canonical_SNV CDS_variant 1 C61
Chr3:64045825 C T EMS_canonical_SNV CDS_variant 1 C9
Chr3:64045828 C T EMS_canonical_SNV CDS_variant 1 D10
Chr3:64045897 G A EMS_canonical_SNV CDS_variant 2 B2,B37
Chr3:64045906 G A EMS_canonical_SNV CDS_variant 1 A1

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057943787.1
TCAATGGCGCCCCCCTCGCAGAAAGTGGTGTGCATAAAGCATGTGAAGCAGGAGACGGCGGAGGAGTGGGACGAGACGATGCCGCTGCCGGGGGACATAATCGAGGGCGTGGGCGAGGACTGCGGGGACGAGTCCTTCGTCTCGGCCAAGGCGCGGGCGGACCTCAACTCGCAGCTGGGGAGGATCCACCGCGTGGCCGAGGTGGTGTGGCTGAAGGTGCGGAGAGGGGAGGGGACCCTCAAGCTCCGAGTCTGCGTCGT...

CDS

1 records

下载 CDS FASTA
LOC131015405
ATGGCGCCCCCCTCGCAGAAAGTGGTGTGCATAAAGCATGTGAAGCAGGAGACGGCGGAGGAGTGGGACGAGACGATGCCGCTGCCGGGGGACATAATCGAGGGCGTGGGCGAGGACTGCGGGGACGAGTCCTTCGTCTCGGCCAAGGCGCGGGCGGACCTCAACTCGCAGCTGGGGAGGATCCACCGCGTGGCCGAGGTGGTGTGGCTGAAGGTGCGGAGAGGGGAGGGGACCCTCAAGCTCCGAGTCTGCGTCGTGCC...

Protein

1 records

下载 Protein FASTA
XP_057799770.1
MAPPSQKVVCIKHVKQETAEEWDETMPLPGDIIEGVGEDCGDESFVSAKARADLNSQLGRIHRVAEVVWLKVRRGEGTLKLRVCVVPDVNVKLQKKFTVRAASDERHVAVLAEMTFQECFDLQEMSRRVVNLDFKGFHRKGMKYDWKHKVGSSLPDRRSTVVSSILFTPLSRERGTEASTVRAMAWFSAAISSGIPLVFTNIQTEQIITSERSQTTSTVNVAQGIRLWFLPGLAEVPIELFPRPGEFRFGMDIKRTEEGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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