Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004653`

染色体: Chr03 坐标: 64052072-64054609 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004653`
名称	SmilChr03G004653
描述	uncharacterized SmilChr03G004653
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64052072 - 64054609 / `+`

ID 对照

NCBI Gene ID	`LOC131015345`
GeneID	`131015345`
locus_tag	`-`
NCBI Name	`LOC131015345`
原始查询	`SmilChr03G004653`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low
Arabidopsis	`AT3G59120` (AT3G59120) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081] identity=28.3; qcov=0.843; evalue=8.43e-39; confidence=low
Rice	`Os07g0610200` - identity=29.3; qcov=0.329; evalue=1.24e-09; confidence=low
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:131015345

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799698.1`
2	Nucleus	细胞核	0.20000	`XP_057799698.1`
3	Vacuole	液泡	0.20000	`XP_057799698.1`
4	Chromosome	染色体	0.00000	`XP_057799698.1`
5	Centromere	着丝粒	0.00000	`XP_057799698.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64052170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr3:64052193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,A18,C80,C84
`Chr3:64052194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr3:64052217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:64052228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,B71
`Chr3:64052236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:64052247`	`AGG`	`A`	2bp_deletion	frameshift_variant	4	A16,B108,B45,C72
`Chr3:64052247`	`AGG`	`A`	2bp_deletion	CDS_variant	4	A16,B108,B45,C72
`Chr3:64052252`	`A`	`ACT`	2bp_insertion	frameshift_variant	4	A16,B108,B45,C72
`Chr3:64052252`	`A`	`ACT`	2bp_insertion	CDS_variant	4	A16,B108,B45,C72
`Chr3:64052259`	`T`	`TGA`	2bp_insertion	frameshift_variant	13	B105,B128,B130,B140,B21,B29,B78,C12,C24,C3,C39,C41,D10
`Chr3:64052262`	`TTG`	`T`	2bp_deletion	frameshift_variant	13	B105,B128,B130,B140,B21,B29,B78,C12,C24,C3,C39,C41,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799698.1

654 aa

327

654

C1_2

PF03107 C1_2 222-272 aa PF03107 C1_2 405-452 aa PF03107 C1_2 463-507 aa PF03107 C1_2 521-569 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799698.1`	Pfam	`PF03107`	C1_2	Domain	222	272	2e-51	172.8	C1 domain
`XP_057799698.1`	Pfam	`PF03107`	C1_2	Domain	405	452	2e-51	172.8	C1 domain
`XP_057799698.1`	Pfam	`PF03107`	C1_2	Domain	463	507	2e-51	172.8	C1 domain
`XP_057799698.1`	Pfam	`PF03107`	C1_2	Domain	521	569	2e-51	172.8	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943715.1
TGTATGATTCCATTCTATGTCTGTTAAATGTTTCCAAAGCTCAAAGCTCCATAGACATCCACCACCCATATACAATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCACCATTGGAGTCACGAGCATCGACTTACTCTGGGGGAACCTCGTATAGGAGAAAGATTTTTTTGCTGTGGAAGGCGTTTTAATGGAGGAGAGAAAGCTTATGAATGTAGATGTTGGAAAAATATCGTATTA...

CDS

1 records

下载 CDS FASTA

LOC131015345
ATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCACCATTGGAGTCACGAGCATCGACTTACTCTGGGGGAACCTCGTATAGGAGAAAGATTTTTTTGCTGTGGAAGGCGTTTTAATGGAGGAGAGAAAGCTTATGAATGTAGATGTTGGAAAAATATCGTATTAGATGAAGAATGTTTGGGAATGCCGATGAAGATTAGGCACGCAATGCACCCACAACACATACTCACTCATCATGT...

Protein

1 records

下载 Protein FASTA

XP_057799698.1
MSGKENKIEEEEEETKVVHHWSHEHRLTLGEPRIGERFFCCGRRFNGGEKAYECRCWKNIVLDEECLGMPMKIRHAMHPQHILTHHVFSYDEYYLGTLTGKLCAICESSLINRRSFGTNTEGSIFYKCTRAECRLWMHMRCAQGSDMMYDADDDDDDEQHRTIDHPSHPKHGLKLVRRSCRFKCDACGITRGVKSYMCCIANCQYWIHNSCSSLPQAIESEYHSHSLSLSFHVPPSYMRRDLKCDVCKKYLPFKYWIYHC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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