当前解析结果
SmilChr03G004664| 统一新 Gene ID | SmilChr03G004664 |
|---|---|
| 名称 | SmilChr03G004664 |
| 描述 | peroxisome biogenesis factor 10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64108932 - 64112757 / - |
| NCBI Gene ID | LOC131015397 |
|---|---|
| GeneID | 131015397 |
| locus_tag | - |
| NCBI Name | LOC131015397 |
| 原始查询 | SmilChr03G004664 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxisome biogenesis factor 10 |
| 产物 | peroxisome biogenesis factor 10 |
| Arabidopsis | AT2G26350 (PEX10)peroxin 10 [Source:NCBI gene (formerly Entrezgene);Acc:817175] identity=67.3; qcov=0.985; evalue=0; confidence=high |
| Rice | Os07g0608800 (OsRFP)- identity=65; qcov=0.941; evalue=1.28e-176; confidence=high |
| GO | GO:0005778 (peroxisomal membrane); GO:0008270 (zinc ion binding); GO:0016558 (protein import into peroxisome matrix) |
| KEGG | smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00097 (zf-C3HC4); PF04757 (Pex2_Pex12); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015397 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057799760.1 |
| 2 | Peroxisome membrane | 过氧化物酶体膜 | 1.00000 | XP_057799760.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799760.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799760.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799760.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64109394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B128,C25,C7 |
Chr3:64109728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr3:64109965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:64110027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B55,C16,C82 |
Chr3:64110562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr3:64111085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:64111105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A4,C70 |
Chr3:64111348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C18,C2,D10 |
Chr3:64112105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:64112540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799760.1PF04757
Pex2_Pex12 48-273 aa
PF13923
zf-C3HC4_2 336-374 aa
PF13639
zf-RING_2 336-375 aa
PF13920
zf-C3HC4_3 336-380 aa
PF13445
zf-RING_UBOX 337-372 aa
PF00097
zf-C3HC4 337-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799760.1 |
Pfam | PF04757 |
Pex2_Pex12 | Family | 48 | 273 | 8.9e-42 | 144.0 | Pex2 / Pex12 amino terminal region |
XP_057799760.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 336 | 374 | 9.2e-08 | 32.5 | Zinc finger, C3HC4 type (RING finger) |
XP_057799760.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 336 | 375 | 2.5e-10 | 41.2 | Ring finger domain |
XP_057799760.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 336 | 380 | 1.4e-09 | 38.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057799760.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 337 | 372 | 2.8e-06 | 27.9 | RING-type zinc-finger |
XP_057799760.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 337 | 374 | 1.1e-07 | 32.3 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。