当前解析结果
SmilChr03G004665| 统一新 Gene ID | SmilChr03G004665 |
|---|---|
| 名称 | SmilChr03G004665 |
| 描述 | NAD(P)H-quinone oxidoreductase subunit U, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64113354 - 64115424 / + |
| NCBI Gene ID | LOC131015444 |
|---|---|
| GeneID | 131015444 |
| locus_tag | - |
| NCBI Name | LOC131015444 |
| 原始查询 | SmilChr03G004665 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)H-quinone oxidoreductase subunit U, chloroplastic |
| 产物 | NAD(P)H-quinone oxidoreductase subunit U%2C chloroplastic |
| Arabidopsis | AT5G21430 (NdhU)Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832247] identity=51.3; qcov=0.863; evalue=2.24e-54; confidence=high |
| Rice | Os12g0498500- identity=61; qcov=0.667; evalue=1.15e-58; confidence=high |
| GO | GO:0009507 (chloroplast); GO:0009535 (chloroplast thylakoid membrane); GO:0010598 (NAD(P)H dehydrogenase complex (plastoquinone)) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015444 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057799836.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057799836.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057799836.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057799836.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057799836.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64113672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B17,B47,C35,C45,D10 |
Chr3:64113704 |
C |
CA |
1bp_insertion | frameshift_variant | 21 | A15,A19,A20,B10,B104,B118,B126,B135,B139,B65,B67,B69,B88,C14,C28,C47,C70,C71,C76,C80,D3 |
Chr3:64113707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,C62 |
Chr3:64113708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:64113715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C38 |
Chr3:64113745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:64113761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:64113766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C40 |
Chr3:64113783 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr3:64113966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr3:64114691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,B66,C62 |
Chr3:64114806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B118,C59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。