Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004666`

染色体: Chr03 坐标: 64116213-64122445 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004666`
名称	SmilChr03G004666
描述	E3 ubiquitin ligase PQT3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64116213 - 64122445 / `-`

ID 对照

NCBI Gene ID	`LOC131015333`
GeneID	`131015333`
locus_tag	`-`
NCBI Name	`LOC131015333`
原始查询	`SmilChr03G004666`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin ligase PQT3-like
产物	E3 ubiquitin ligase PQT3-like
Arabidopsis	`AT5G47430` (AT5G47430) DWNN domain, a CCHC-type zinc finger [Source:NCBI gene (formerly Entrezgene);Acc:834790] identity=39.4; qcov=0.137; evalue=1.1e-09; confidence=weak
Rice	`Os10g0431000` - identity=32.6; qcov=0.214; evalue=8.85e-12; confidence=weak
GO	GO:0003676 (nucleic acid binding); GO:0005634 (nucleus); GO:0006397 (mRNA processing); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF00098 (zf-CCHC); PF08783 (DWNN); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131015333

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799673.1`
2	Chromosome	染色体	0.00000	`XP_057799673.1`
3	Centromere	着丝粒	0.00000	`XP_057799673.1`
4	Chromatin	染色质	0.00000	`XP_057799673.1`
5	Telomere	端粒	0.00000	`XP_057799673.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64116494`	`T`	`TC`	1bp_insertion	frameshift_variant	7	A18,B12,B121,B133,B55,C16,C82
`Chr3:64116526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,C19
`Chr3:64116573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,C15
`Chr3:64116965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr3:64117295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B118
`Chr3:64117446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr3:64118999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B63,B98,C71
`Chr3:64119002`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B45,C58,C72
`Chr3:64119677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr3:64119691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C25,C43,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799673.1

727 aa

364

727

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 194-233 aa PF00097 zf-C3HC4 195-233 aa PF00098 zf-CCHC 394-409 aa

XP_057799674.1

725 aa

362

725

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 194-233 aa PF00097 zf-C3HC4 195-233 aa PF00098 zf-CCHC 392-407 aa

XP_057799675.1

719 aa

360

719

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 186-225 aa PF00097 zf-C3HC4 187-225 aa PF00098 zf-CCHC 386-401 aa

XP_057799676.1

717 aa

358

717

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 186-225 aa PF00097 zf-C3HC4 187-225 aa PF00098 zf-CCHC 384-399 aa

XP_057799677.1

694 aa

347

694

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 194-233 aa PF00097 zf-C3HC4 195-233 aa PF00098 zf-CCHC 361-376 aa

XP_057799678.1

692 aa

346

692

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 194-233 aa PF00097 zf-C3HC4 195-233 aa PF00098 zf-CCHC 359-374 aa

XP_057799679.1

686 aa

343

686

DWNN

zf-C3HC4_2

zf-C3HC4

zf-CCHC

PF08783 DWNN 3-76 aa PF13923 zf-C3HC4_2 186-225 aa PF00097 zf-C3HC4 187-225 aa PF00098 zf-CCHC 353-368 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799673.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2.1e-14	54.2	DWNN domain
`XP_057799673.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	194	233	3.7e-08	33.7	Zinc finger, C3HC4 type (RING finger)
`XP_057799673.1`	Pfam	`PF00097`	zf-C3HC4	Domain	195	233	0.0001	22.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799673.1`	Pfam	`PF00098`	zf-CCHC	Domain	394	409	0.0001	22.9	Zinc knuckle
`XP_057799674.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2.1e-14	54.2	DWNN domain
`XP_057799674.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	194	233	3.7e-08	33.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799674.1`	Pfam	`PF00097`	zf-C3HC4	Domain	195	233	0.0001	22.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799674.1`	Pfam	`PF00098`	zf-CCHC	Domain	392	407	0.0001	22.9	Zinc knuckle
`XP_057799675.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2.2e-14	54.2	DWNN domain
`XP_057799675.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	186	225	3.6e-08	33.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799675.1`	Pfam	`PF00097`	zf-C3HC4	Domain	187	225	0.0001	22.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799675.1`	Pfam	`PF00098`	zf-CCHC	Domain	386	401	0.0001	22.9	Zinc knuckle
`XP_057799676.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2.1e-14	54.2	DWNN domain
`XP_057799676.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	186	225	3.6e-08	33.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799676.1`	Pfam	`PF00097`	zf-C3HC4	Domain	187	225	0.0001	22.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799676.1`	Pfam	`PF00098`	zf-CCHC	Domain	384	399	0.0001	22.9	Zinc knuckle
`XP_057799677.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2e-14	54.3	DWNN domain
`XP_057799677.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	194	233	6.8e-08	32.9	Zinc finger, C3HC4 type (RING finger)
`XP_057799677.1`	Pfam	`PF00097`	zf-C3HC4	Domain	195	233	9.6e-05	22.9	Zinc finger, C3HC4 type (RING finger)
`XP_057799677.1`	Pfam	`PF00098`	zf-CCHC	Domain	361	376	9.4e-05	23.0	Zinc knuckle
`XP_057799678.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2e-14	54.3	DWNN domain
`XP_057799678.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	194	233	6.7e-08	32.9	Zinc finger, C3HC4 type (RING finger)
`XP_057799678.1`	Pfam	`PF00097`	zf-C3HC4	Domain	195	233	9.5e-05	22.9	Zinc finger, C3HC4 type (RING finger)
`XP_057799678.1`	Pfam	`PF00098`	zf-CCHC	Domain	359	374	9.3e-05	23.1	Zinc knuckle
`XP_057799679.1`	Pfam	`PF08783`	DWNN	Domain	3	76	2e-14	54.3	DWNN domain
`XP_057799679.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	186	225	6.7e-08	32.9	Zinc finger, C3HC4 type (RING finger)
`XP_057799679.1`	Pfam	`PF00097`	zf-C3HC4	Domain	187	225	9.3e-05	22.9	Zinc finger, C3HC4 type (RING finger)
`XP_057799679.1`	Pfam	`PF00098`	zf-CCHC	Domain	353	368	9.1e-05	23.1	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057943696.1
GCTGGCCGTTAGCAATCAGCCCCGTCTCCCTTGACTCTCACACATCAGCTTATGCAAAACCCGAAGGCGAAAACCCTTTCGCAAGTTGCAGCTCCATTATTCCATACACACATACAGAATCTTCTACACGCAGTTTATACAATCGTACGCGTATGCAATTAATCATATATACAATTGGCTGATAATTTGACGACGAAGTTCGAGATATGTCAATTCGGTTCAGATTTAGGAGCTCTATGAATTTTGATACGATGGAGATC...

XM_057943693.1
GCTGGCCGTTAGCAATCAGCCCCGTCTCCCTTGACTCTCACACATCAGCTTATGCAAAACCCGAAGGCGAAAACCCTTTCGCAAGTTGCAGCTCCATTATTCCATACACACATACAGAATCTTCTACACGCAGTTTATACAATCGTACGCGTATGCAATTAATCATATATACAATTGGCTGATAATTTGACGACGAAGTTCGAGATATGTCAATTCGGTTCAGATTTAGGAGCTCTATGAATTTTGATACGATGGAGATC...

CDS

7 records

下载 CDS FASTA

LOC131015333
ATGTCAATTCGGTTCAGATTTAGGAGCTCTATGAATTTTGATACGATGGAGATCGGGAGCCGCGACTCAATTTCGGTGACGGAGCTGAGATCGAGAATCATGCGCGGGAAGGATTCTCAGCAACAGCAAGGGTTTGATCTAGTTTTCTCCGACGCGGTTTCTGGTTTAGAGTACAAGTGCGATTCTCAAATTCCTAGTGGATCCAGCGTGATTGTTAAGAGAGTTCCTGGTGGAACACTTCCGTCATCTGTGGTGCCCAT...

Protein

7 records

下载 Protein FASTA

XP_057799673.1
MSIRFRFRSSMNFDTMEIGSRDSISVTELRSRIMRGKDSQQQQGFDLVFSDAVSGLEYKCDSQIPSGSSVIVKRVPGGTLPSSVVPIEAVKHVVLNESHNLNLAKTGPRNDFDDLGADLCPKPDSDLPCFDQELDENNFMGNKNGDAAVIPSGLCQHGNDRNILPVAPELMKSNKLHTSNFLTVQGSNLPLELKCSLCKNFFTDAVMIPCCQHSFCEKCIHQVLFATGTCPKCLSRKCTIADLLPNLSLRQATEHLLESH...

XP_057799674.1
MSIRFRFRSSMNFDTMEIGSRDSISVTELRSRIMRGKDSQQQQGFDLVFSDAVSGLEYKCDSQIPSGSSVIVKRVPGGTLPSSVVPIEAVKHVVLNESHNLNLAKTGPRNDFDDLGADLCPKPDSDLPCFDQELDENNFMGNKNGDAAVIPSGLCQHGNDRNILPVAPELMKSNKLHTSNFLTVQGSNLPLELKCSLCKNFFTDAVMIPCCQHSFCEKCIHQVLFATGTCPKCLSRKCTIADLLPNLSLRQATEHLLESH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器