Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004668

染色体: Chr03 坐标: 64147747-64151428 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004668
名称SmilChr03G004668
描述cytokinin dehydrogenase 7
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向64147747 - 64151428 / +

ID 对照

NCBI Gene IDLOC131015369
GeneID131015369
locus_tag-
NCBI NameLOC131015369
原始查询SmilChr03G004668

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytokinin dehydrogenase 7
产物cytokinin dehydrogenase 7
ArabidopsisAT5G21482 (CKX7)
cytokinin oxidase 7 [Source:NCBI gene (formerly Entrezgene);Acc:832248]
identity=63.8; qcov=1.03; evalue=0; confidence=high
RiceOs08g0460600 (OsCKX11)
-
identity=58.4; qcov=0.918; evalue=0; confidence=high
GOGO:0009690 (cytokinin metabolic process); GO:0019139 (cytokinin dehydrogenase activity); GO:0071949 (FAD binding)
KEGGsmil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF01565 (FAD_binding_4); PF09265 (Cytokin-bind)
InterPro-
eggNOG-
NRGeneID:131015369

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.60000 XP_057799732.1
2 Cytoplasm 细胞质 0.40000 XP_057799732.1
3 Peroxisome 过氧化物酶体 0.40000 XP_057799732.1
4 Chloroplast 叶绿体 0.20000 XP_057799732.1
5 Nucleus 细胞核 0.00000 XP_057799732.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:64148090 C T EMS_canonical_SNV CDS_variant 2 B30,C76
Chr3:64148093 C T EMS_canonical_SNV CDS_variant 1 D10
Chr3:64148124 C T EMS_canonical_SNV CDS_variant 5 B49,B64,C74,C85,D11
Chr3:64148126 C T EMS_canonical_SNV CDS_variant 1 D10
Chr3:64148212 C T EMS_canonical_SNV CDS_variant 1 A2
Chr3:64148279 C T EMS_canonical_SNV CDS_variant 4 B108,B45,C2,C72
Chr3:64148397 G A EMS_canonical_SNV CDS_variant 1 B28
Chr3:64148456 G A EMS_canonical_SNV CDS_variant 2 C47,D6
Chr3:64148462 G A EMS_canonical_SNV CDS_variant 1 C14
Chr3:64148513 C T EMS_canonical_SNV CDS_variant 2 B7,C76
Chr3:64148704 C T EMS_canonical_SNV CDS_variant 1 B66
Chr3:64149039 C T EMS_canonical_SNV CDS_variant 4 B40,B60,C42,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057799732.1
513 aa
N
1
256
513
FAD_binding_4
Cytokin-bind
C
PF01565 FAD_binding_4 55-194 aa PF09265 Cytokin-bind 226-506 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799732.1 Pfam PF01565 FAD_binding_4 Domain 55 194 8.7e-25 87.8 FAD binding domain
XP_057799732.1 Pfam PF09265 Cytokin-bind Domain 226 506 2.7e-112 375.5 Cytokinin dehydrogenase 1, FAD and cytokinin binding

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057943749.1
CACACACTGACCCAAGAAAATCTTTAAACTCTTTTTTTTCTCTTTTTCTTAATTTCTTATTTCTTTTCCATCTTACGTCAAATTCTAACTCACCACTTCAATTTTTCATTTTTATTTTTATTTTTTCGATATAAAACTCCAATAATAATATATTATTATTTCCTTCTCTCACCTCTCTCTACTTAATCCCAATAAATCCACAAATATTTGAAGCCGTTTTAATTCCCAATAATTCATTCCATTTCAAGAAAAGGGCAACC...

CDS

1 records

下载 CDS FASTA
LOC131015369
ATGATAGCCTTCATAGAGCGATTCGCCCCCGAAAACGACGTCGATTCATCGCCGGAGCCCGACTCCGCCGCCGACTACAGCGGCGAGGTCCTCCCCCTCTTCTCCGGCGCCGACGATCTCGCCGACGCCGGCAAGGACTTTGGCGGCACGCAATTCTCCAAACCCCTCGCCGTCGTCCGCCCCTCCGACGCCGCCGACGTCGCCAAGGTCGTGCGGCTGGCGGCGCGGTCGCCGCACCTCACCGTCGCCGCCCGCGGCAA...

Protein

1 records

下载 Protein FASTA
XP_057799732.1
MIAFIERFAPENDVDSSPEPDSAADYSGEVLPLFSGADDLADAGKDFGGTQFSKPLAVVRPSDAADVAKVVRLAARSPHLTVAARGNGHSVHGQAMAHRGLVVDTRSLGCGIHVDAAAMRADVGGGALWEDVLRHCVGAYGVAPRSWTDYLGLTVGGTLSNAGVSGQTFAHGPQTENVTELEVVTGNGDVLVCSGRQNSELFFAALGGLGQFGIITRARVVLQPAPDMVRWIRMVYTEFSDFTRDAESLVTRPDGDSFDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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