当前解析结果
SmilChr03G004668| 统一新 Gene ID | SmilChr03G004668 |
|---|---|
| 名称 | SmilChr03G004668 |
| 描述 | cytokinin dehydrogenase 7 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64147747 - 64151428 / + |
| NCBI Gene ID | LOC131015369 |
|---|---|
| GeneID | 131015369 |
| locus_tag | - |
| NCBI Name | LOC131015369 |
| 原始查询 | SmilChr03G004668 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytokinin dehydrogenase 7 |
| 产物 | cytokinin dehydrogenase 7 |
| Arabidopsis | AT5G21482 (CKX7)cytokinin oxidase 7 [Source:NCBI gene (formerly Entrezgene);Acc:832248] identity=63.8; qcov=1.03; evalue=0; confidence=high |
| Rice | Os08g0460600 (OsCKX11)- identity=58.4; qcov=0.918; evalue=0; confidence=high |
| GO | GO:0009690 (cytokinin metabolic process); GO:0019139 (cytokinin dehydrogenase activity); GO:0071949 (FAD binding) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01565 (FAD_binding_4); PF09265 (Cytokin-bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015369 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057799732.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057799732.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057799732.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057799732.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057799732.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64148090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,C76 |
Chr3:64148093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:64148124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B49,B64,C74,C85,D11 |
Chr3:64148126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:64148212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:64148279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B45,C2,C72 |
Chr3:64148397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr3:64148456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C47,D6 |
Chr3:64148462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr3:64148513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B7,C76 |
Chr3:64148704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr3:64149039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B40,B60,C42,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799732.1PF01565
FAD_binding_4 55-194 aa
PF09265
Cytokin-bind 226-506 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799732.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 55 | 194 | 8.7e-25 | 87.8 | FAD binding domain |
XP_057799732.1 |
Pfam | PF09265 |
Cytokin-bind | Domain | 226 | 506 | 2.7e-112 | 375.5 | Cytokinin dehydrogenase 1, FAD and cytokinin binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。