当前解析结果
SmilChr03G004674| 统一新 Gene ID | SmilChr03G004674 |
|---|---|
| 名称 | SmilChr03G004674 |
| 描述 | copper-transporting ATPase PAA2, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64176894 - 64183309 / + |
| NCBI Gene ID | LOC131015512 |
|---|---|
| GeneID | 131015512 |
| locus_tag | - |
| NCBI Name | LOC131015512 |
| 原始查询 | SmilChr03G004674 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | copper-transporting ATPase PAA2, chloroplastic |
| 产物 | copper-transporting ATPase PAA2%2C chloroplastic |
| Arabidopsis | AT5G21930 (PAA2)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832253] identity=68; qcov=0.982; evalue=0; confidence=high |
| Rice | Os03g0178100 (OsHMA6)- identity=67.7; qcov=0.907; evalue=0; confidence=high |
| GO | GO:0005507 (copper ion binding); GO:0005524 (ATP binding); GO:0006812 (monoatomic cation transport); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043682 (P-type divalent copper transporter activity); GO:0055070 (copper ion homeostasis) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00403 (HMA); PF00702 (Hydrolase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015512 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057799899.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057799899.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799899.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799899.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799899.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64177044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr3:64177145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:64177292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr3:64177368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr3:64177530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:64178762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr3:64179012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr3:64179344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:64180672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B30,C12,C28,D11 |
Chr3:64180880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr3:64181219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B30,C12,C28 |
Chr3:64181226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799899.1PF00403
HMA 83-147 aa
PF00122
E1-E2_ATPase 343-434 aa
PF00702
Hydrolase 546-778 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799899.1 |
Pfam | PF00403 |
HMA | Domain | 83 | 147 | 6.7e-08 | 33.5 | Heavy-metal-associated domain |
XP_057799899.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 343 | 434 | 6.1e-28 | 97.3 | P-type ATPase actuator domain |
XP_057799899.1 |
Pfam | PF00702 |
Hydrolase | Domain | 546 | 778 | 1.2e-27 | 98.3 | haloacid dehalogenase-like hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。