Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004700`

染色体: Chr03 坐标: 64314222-64317049 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004700`
名称	SmilChr03G004700
描述	uncharacterized SmilChr03G004700
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64314222 - 64317049 / `+`

ID 对照

NCBI Gene ID	`LOC131015540`
GeneID	`131015540`
locus_tag	`-`
NCBI Name	`LOC131015540`
原始查询	`SmilChr03G004700`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	HSP23.6; symbol=HSP23.6; hit=Os02g0201000; species=rice; confidence=medium
产物	HSP23.6; symbol=HSP23.6; hit=Os02g0201000; species=rice; confidence=medium
Arabidopsis	`AT5G25360` (AT5G25360) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832608] identity=66.1; qcov=1; evalue=3.21e-45; confidence=medium
Rice	`Os02g0201000` (HSP23.6) - identity=67.6; qcov=1.02; evalue=3.03e-45; confidence=medium
GO	-
KEGG	-
Pfam	PF13259 (clamp_Gag1-like)
InterPro	-
eggNOG	-
NR	GeneID:131015540

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799935.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799933.1`
3	Cytosol	细胞质基质	0.60000	`XP_057799933.1`
4	Nucleus membrane	核膜	0.20000	`XP_057799934.1`
5	Lipid droplet	脂滴	0.20000	`XP_057799931.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64315308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr3:64315336`	`GA`	`G`	1bp_deletion	frameshift_variant	21	A1,A16,A22,B109,B134,B137,B139,B14,B16,B54,B57,B7,B86,C17,C18,C34,C49,C71,C76,C78,C9
`Chr3:64315347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:64315359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,C78
`Chr3:64315360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:64315423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:64316135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr3:64316221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799931.1

206 aa

103

206

clamp_Gag1-like

PF13259 clamp_Gag1-like 97-206 aa

XP_057799933.1

159 aa

159

clamp_Gag1-like

PF13259 clamp_Gag1-like 50-159 aa

XP_057799934.1

174 aa

174

clamp_Gag1-like

PF13259 clamp_Gag1-like 65-174 aa

XP_057799935.1

109 aa

109

clamp_Gag1-like

PF13259 clamp_Gag1-like 5-66 aa PF13259 clamp_Gag1-like 67-109 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799931.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	97	206	3e-28	99.6	Gag1-like, clamp domain
`XP_057799933.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	50	159	1.1e-28	101.0	Gag1-like, clamp domain
`XP_057799934.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	65	174	1.6e-28	100.5	Gag1-like, clamp domain
`XP_057799935.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	5	66	6.3e-29	101.8	Gag1-like, clamp domain
`XP_057799935.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	67	109	6.3e-29	101.8	Gag1-like, clamp domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057943950.1
GAAGAATTCAATAATTCAAGAGTCAACCTCAAAGGGGCAATTAAGTAATTTCAGGTGAGGACAATTCACAAGTGGGGGCGTACAGCCCATGCTCTCTCGCTTACCCACTTCACACAACTCTCTCTCTCTCTCTCTAGAGACTGTATTCGCGACGCCTTTTCTGCTGCCATATTCGAGAATCAACACCCCATGAGCTAGCGGGTTGATCAGATCAAGAGGAATAGTGGGCTCTATCTTGTGGTGGATGTTTAGATCTGGGC...

XM_057943951.1
ATTTCAGGTGAGGACAATTCACAAGTGGGGGCGTACAGCCCATGCTCTCTCGCTTACCCACTTCACACAACTCTCTCTCTCTCTCTCTAGAGACTGTATTCGCGACGCCTTTTCTGCTGCCATATTCGAGAATCAACACCCCATGAGCTAGCGGGTTGATCAGATCAAGAGGAATAGTGGGCTCTATCTTGTGGTGGATGTTTAGATCTGGGCTTCGGAAAAGGAATGATTTTTCCGAGTTTTGGTTGTAGCACTAGTGT...

CDS

4 records

下载 CDS FASTA

LOC131015540
ATGAAGTATTGGTGTAGATCAATTCTCCATTGGGTTTCTCAGTTTATTGCATGCATGGGAGGTTGTCTTGGATGTTGTACCAAGCCACCGCTTGTAATTTCCGTGGATGAGCCATCGAAGGGGCTCAAGATTCAAGGCCAACGCGTGAAGAAACACAGTTTAACAGAGGACTTTTGGAGCCCCAGTTCGGGTGATATGGACAACAGCGCCTTTCCATCTCATAGAAGTGTCTCATCAATCAGCACTTCGAACCAAACACT...

LOC131015540
ATGCATGGGAGCAGAGGTTGTCTTGGATGTTGTACCAAGCCACCGCTTGTAATTTCCGTGGATGAGCCATCGAAGGGGCTCAAGATTCAAGGCCAACGCGTGAAGAAACACAGTTTAACAGAGGACTTTTGGAGCCCCAGTTCGGGTGATATGGACAACAGCGCCTTTCCATCTCATAGAAGTGTCTCATCAATCAGCACTTCGAACCAAACACTTGATACTCACAGTAGCACAGGTGGCACAAGCAACTCCTCCGAATT...

Protein

4 records

下载 Protein FASTA

XP_057799931.1
MYDGCRLLVEMETCAKRPSYSLSWCYREYFEEFFGLIMERLKNKCREFFLSRGCLGCCTKPPLVISVDEPSKGLKIQGQRVKKHSLTEDFWSPSSGDMDNSAFPSHRSVSSISTSNQTLDTHSSTGGTSNSSEFVNHGLLLWNQTRQQWVGSKGSQKPGQAQEPKLSFNATYESLLGTNKPFPQPIPLTEMVDFLVDVWEQEGLYD

XP_057799933.1
MHGSRGCLGCCTKPPLVISVDEPSKGLKIQGQRVKKHSLTEDFWSPSSGDMDNSAFPSHRSVSSISTSNQTLDTHSSTGGTSNSSEFVNHGLLLWNQTRQQWVGSKGSQKPGQAQEPKLSFNATYESLLGTNKPFPQPIPLTEMVDFLVDVWEQEGLYD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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