Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004702`

染色体: Chr03 坐标: 64324390-64327614 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004702`
名称	SmilChr03G004702
描述	protein WVD2-like 5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64324390 - 64327614 / `-`

ID 对照

NCBI Gene ID	`LOC131015542`
GeneID	`131015542`
locus_tag	`-`
NCBI Name	`LOC131015542`
原始查询	`SmilChr03G004702`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein WVD2-like 5
产物	protein WVD2-like 5
Arabidopsis	`AT4G32330` (AT4G32330) TPX2 (targeting protein for Xklp2) protein family [Source:NCBI gene (formerly Entrezgene);Acc:829367] identity=45.4; qcov=0.941; evalue=3.05e-70; confidence=high
Rice	`Os06g0606800` (P0029C06.13-3) - identity=64; qcov=0.422; evalue=3.65e-67; confidence=low
GO	GO:0008017 (microtubule binding)
KEGG	-
Pfam	PF06886 (TPX2)
InterPro	-
eggNOG	-
NR	GeneID:131015542

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057799937.1`
2	Cytosol	细胞质基质	0.60000	`XP_057799937.1`
3	Nucleus	细胞核	0.20000	`XP_057799937.1`
4	Chromosome	染色体	0.00000	`XP_057799937.1`
5	Centromere	着丝粒	0.00000	`XP_057799937.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64324662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C14,C57,C77
`Chr3:64324679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr3:64324680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr3:64324749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:64324764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C59
`Chr3:64324833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B109,B139
`Chr3:64324872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr3:64324875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,D11
`Chr3:64324893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,B129
`Chr3:64324936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr3:64324944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B23,C12,C45
`Chr3:64324977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,C11,C69,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799937.1

389 aa

194

389

TPX2

PF06886 TPX2 204-274 aa

XP_057799938.1

389 aa

194

389

TPX2

PF06886 TPX2 204-274 aa

XP_057799939.1

389 aa

194

389

TPX2

PF06886 TPX2 204-274 aa

XP_057799940.1

389 aa

194

389

TPX2

PF06886 TPX2 204-274 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799937.1`	Pfam	`PF06886`	TPX2	Domain	204	274	3.9e-27	94.7	Targeting protein for Xklp2 (TPX2) domain
`XP_057799938.1`	Pfam	`PF06886`	TPX2	Domain	204	274	3.9e-27	94.7	Targeting protein for Xklp2 (TPX2) domain
`XP_057799939.1`	Pfam	`PF06886`	TPX2	Domain	204	274	3.9e-27	94.7	Targeting protein for Xklp2 (TPX2) domain
`XP_057799940.1`	Pfam	`PF06886`	TPX2	Domain	204	274	3.9e-27	94.7	Targeting protein for Xklp2 (TPX2) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057943956.1
CACACACACATTTTCCTGTTTTGTGCTCTATAAAGAGAGTGTGTGCAAAATAAAAAAAAAAATCTTTTTCAATTTCAAGAAACAACAAAAAGGAAAAGAGTTTATAGGAGAAAACAAACTAAATTATTATATGCCCAAAAACAAGCAAATAAATTTCGAAAATTTCAAGATCATCATTCCAAAGTTCAGACTACCAACTGACCAAAACCAGGCGAAACCCATTTCAGAATCAGTCAGATCTTCTTTACCCTCCAATGATT...

XM_057943955.1
GTGTGCAAAATAAAAAAAAAAATCTTTTTCAATTTCAAGAAACAACAAAAAGGAAAAGAGTTTATAGGAGAAAACAAACTAAATTATTATATGCCCAAAAACAAGCAAATAAATTTCGAAAATTTCAAGATCATCATTCCAAAGTTCAGACTACCAACTGACCAAAACCAGGCGAAACCCATTTCAGAATCAGTCAGATCTTCTTTACCCTCCAATGATTTACTCCCTCTCTAATTGTTTTCTCCTTCAAATGCTTTGAA...

CDS

4 records

下载 CDS FASTA

LOC131015542
ATGGAAGAGATGGACACTGAAAGTGCCATTCCAGCGACTGGATTTGAAAACGCCGTTGCTTCACAGCTCCCCGTCTCTCCAAGTGTAGACGGGGCTCCCAATGGCAGCGTGGAAGTTGAGATCCTTGACGATGCTGTCAAGTCTTTACCTCCAAAATGCCAATCAACGGGCAAGCCCGCGGAGCTTGAAGTTAAAGAGACGGGGGTCTTGAAGAATTTGAAGCCACTGAAGATCAATAAAGCATCTAGCCCCAAAAATGC...

Protein

4 records

下载 Protein FASTA

XP_057799937.1
MEEMDTESAIPATGFENAVASQLPVSPSVDGAPNGSVEVEILDDAVKSLPPKCQSTGKPAELEVKETGVLKNLKPLKINKASSPKNAAAAVPVKSRNRKEGSKPYVASNGSDASESSQRQTSAFRPKSKSSNENQGSKEQHGRPDATSSSTSGEQAEELLEKTKLKAPRKSPSSKTEEISVSSSSPTAGDARARRSGALPTYGFSFKCDERAEKRREFYSKLEEKIQAKEAEKNNLQAKSKESQDAEIKMLRKTLGFKAM...

XP_057799938.1
MEEMDTESAIPATGFENAVASQLPVSPSVDGAPNGSVEVEILDDAVKSLPPKCQSTGKPAELEVKETGVLKNLKPLKINKASSPKNAAAAVPVKSRNRKEGSKPYVASNGSDASESSQRQTSAFRPKSKSSNENQGSKEQHGRPDATSSSTSGEQAEELLEKTKLKAPRKSPSSKTEEISVSSSSPTAGDARARRSGALPTYGFSFKCDERAEKRREFYSKLEEKIQAKEAEKNNLQAKSKESQDAEIKMLRKTLGFKAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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