Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004708`

染色体: Chr03 坐标: 64352419-64355362 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004708`
名称	SmilChr03G004708
描述	putative clathrin assembly protein At2g25430
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64352419 - 64355362 / `+`

ID 对照

NCBI Gene ID	`LOC131015548`
GeneID	`131015548`
locus_tag	`-`
NCBI Name	`LOC131015548`
原始查询	`SmilChr03G004708`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative clathrin assembly protein At2g25430
产物	putative clathrin assembly protein At2g25430
Arabidopsis	`AT2G25430` (AT2G25430) epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817081] identity=72.1; qcov=1.04; evalue=0; confidence=high
Rice	`Os03g0275500` - identity=64.1; qcov=1.03; evalue=0; confidence=high
GO	GO:0000149 (SNARE binding); GO:0005545 (1-phosphatidylinositol binding); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0005905 (clathrin-coated pit); GO:0006900 (vesicle budding from membrane); GO:0030136 (clathrin-coated vesicle); GO:0032050 (clathrin heavy chain binding); GO:0048268 (clathrin coat assembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG	-
Pfam	PF01417 (ENTH); PF07651 (ANTH)
InterPro	-
eggNOG	-
NR	GeneID:131015548

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799947.1`
2	Cytosol	细胞质基质	0.20000	`XP_057799947.1`
3	Nucleus	细胞核	0.00000	`XP_057799947.1`
4	Chromosome	染色体	0.00000	`XP_057799947.1`
5	Centromere	着丝粒	0.00000	`XP_057799947.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64353188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr3:64353235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B133,B15,B47,C7
`Chr3:64353322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr3:64353363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:64353394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B137,B23,B78,C26
`Chr3:64353559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B44,B68,C45
`Chr3:64353568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B44,B68,C45
`Chr3:64353603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr3:64353805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B66,C15,C63,C79
`Chr3:64354137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,B68
`Chr3:64354181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:64354189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799947.1

637 aa

318

637

ENTH

ANTH

PF01417 ENTH 31-143 aa PF07651 ANTH 31-354 aa

XP_057799948.1

637 aa

318

637

ENTH

ANTH

PF01417 ENTH 31-143 aa PF07651 ANTH 31-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799947.1`	Pfam	`PF01417`	ENTH	Repeat	31	143	4.2e-06	27.5	ENTH domain
`XP_057799947.1`	Pfam	`PF07651`	ANTH	Repeat	31	354	1.3e-78	264.5	ANTH domain
`XP_057799948.1`	Pfam	`PF01417`	ENTH	Repeat	31	143	4.2e-06	27.5	ENTH domain
`XP_057799948.1`	Pfam	`PF07651`	ANTH	Repeat	31	354	1.3e-78	264.5	ANTH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943965.1
CATTATATTTAATATCATACCATCTAAATTAACCCATCCCAAATTTTGAACTACAAGAGTGGCAGTTATAATTAATTCAACACATCAAGAATTCAAGTGAGAGAGAGAGAGAGAGAACCTAGCGGCAACTCACACCAACTGTACCACCGGCCCATCTAATTTCAGCGATATGAATATGTGTATATATATTTCCGATTAATCAAAATCGACGGCCGCGATTCTCCCGGATCTCACCCCGCCATTTAAATCCACCTTTCTAT...

XM_057943964.1
ATTATATTTAATATCATACCATCTAAATTAACCCATCCCAAATTTTGAACTACAAGAGTGGCAGTTATAATTAATTCAACACATCAAGAATTCAAGTGAGAGAGAGAGAGAGAGAACCTAGCGGCAACTCACACCAACTGTACCACCGGCCCATCTAATTTCAGCGATATGAATATGTGTATATATATTTCCGATTAATCAAAATCGACGGCCGCGATTCTCCCGGATCTCACCCCGCCATTTAAATCCACCTTTCTATT...

CDS

2 records

下载 CDS FASTA

LOC131015548
ATGGCGCCGAGCACAATACGGAAAGCGATCGGGGCGGTGAAGGATCAGACGAGCATCGGGATTGCTAAGGTGGCCAGCAACATGGCGCCGGAGCTGGAGGTTGCCATAGTCAAAGCCACCAGCCACGACGACGATCCGGCTTCGGAGAAGTACATAAGGGAGATTCTCCAGCTGACCTCGTTTTCCCGCGGCTATGTCAGCGCCTGCGTCGTCGCGGTGTCTAAAAGGTTGGGGAAAACGCGTGATTGGATTGTGGCCCT...

Protein

2 records

下载 Protein FASTA

XP_057799947.1
MAPSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDDDPASEKYIREILQLTSFSRGYVSACVVAVSKRLGKTRDWIVALKCLMLIHRLLNEGDAVFQQELMYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLEMMIYERKQSGNGGEIERSGARDDRYNYRSPPGSNRGNGYEYSHEYREEPYGMRRSRSSGDVRESAQERKDATPLRDMAPERIFGKMGHLQRLLDRFLSCRPTGLAKNER...

XP_057799948.1
MAPSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDDDPASEKYIREILQLTSFSRGYVSACVVAVSKRLGKTRDWIVALKCLMLIHRLLNEGDAVFQQELMYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLEMMIYERKQSGNGGEIERSGARDDRYNYRSPPGSNRGNGYEYSHEYREEPYGMRRSRSSGDVRESAQERKDATPLRDMAPERIFGKMGHLQRLLDRFLSCRPTGLAKNER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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