当前解析结果
SmilChr03G004709| 统一新 Gene ID | SmilChr03G004709 |
|---|---|
| 名称 | SmilChr03G004709 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64356548 - 64361015 / - |
| NCBI Gene ID | LOC131015549 |
|---|---|
| GeneID | 131015549 |
| locus_tag | - |
| NCBI Name | LOC131015549 |
| 原始查询 | SmilChr03G004709 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 |
| Arabidopsis | AT1G56130 (AT1G56130)Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:842065] identity=43.2; qcov=1.01; evalue=2.05e-171; confidence=medium |
| Rice | Os08g0203700- identity=43; qcov=0.983; evalue=2.47e-160; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF11721 (Malectin); PF12799 (LRR_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015549 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057799950.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057799950.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799950.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799950.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799950.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64356811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:64356888 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C79 |
Chr3:64356888 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C79 |
Chr3:64356892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr3:64356901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,C80 |
Chr3:64356903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr3:64357051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B122 |
Chr3:64357069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr3:64357080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B30,B64,C20,C5 |
Chr3:64357108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B45,B85,C72,C9 |
Chr3:64357135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B120,B90,B92,D7 |
Chr3:64357168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B2,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799950.1PF00560
LRR_1 148-170 aa
PF00560
LRR_1 196-216 aa
PF00560
LRR_1 270-290 aa
PF12799
LRR_4 293-334 aa
PF00560
LRR_1 294-315 aa
PF00560
LRR_1 318-338 aa
PF11721
Malectin 403-588 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799950.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 148 | 170 | 1.2e-23 | 78.8 | Leucine Rich Repeat |
XP_057799950.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 196 | 216 | 1.2e-23 | 78.8 | Leucine Rich Repeat |
XP_057799950.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 270 | 290 | 1.2e-23 | 78.8 | Leucine Rich Repeat |
XP_057799950.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 293 | 334 | 3.2e-14 | 53.3 | Leucine Rich repeats (2 copies) |
XP_057799950.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 294 | 315 | 1.2e-23 | 78.8 | Leucine Rich Repeat |
XP_057799950.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 318 | 338 | 1.2e-23 | 78.8 | Leucine Rich Repeat |
XP_057799950.1 |
Pfam | PF11721 |
Malectin | Domain | 403 | 588 | 1.8e-39 | 136.1 | Malectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。