Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004715`

染色体: Chr03 坐标: 64395648-64397776 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004715`
名称	SmilChr03G004715
描述	putative FBD-associated F-box protein At5g56690
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64395648 - 64397776 / `+`

ID 对照

NCBI Gene ID	`LOC131015555`
GeneID	`131015555`
locus_tag	`-`
NCBI Name	`LOC131015555`
原始查询	`SmilChr03G004715`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative FBD-associated F-box protein At5g56690
产物	putative FBD-associated F-box protein At5g56690
Arabidopsis	`AT5G56690` (AT5G56690) FBD, F-box and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835770] identity=29.6; qcov=0.595; evalue=5.29e-17; confidence=low
Rice	`Os11g0532600` (OsFbox601) - identity=26.2; qcov=0.865; evalue=2.11e-15; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131015555

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799959.1`
2	Cytosol	细胞质基质	0.20000	`XP_057799959.1`
3	Chromosome	染色体	0.00000	`XP_057799959.1`
4	Centromere	着丝粒	0.00000	`XP_057799959.1`
5	Chromatin	染色质	0.00000	`XP_057799959.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64396008`	`A`	`ATC`	2bp_insertion	frameshift_variant	19	A8,B1,B16,B37,B52,B54,B62,B75,B79,B84,C32,C39,C41,C58,C67,C68,C78,C79,D5
`Chr3:64396035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,B38
`Chr3:64396085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,C25,D5
`Chr3:64396100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:64396166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:64396167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B51
`Chr3:64396197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr3:64396235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr3:64396276`	`AGG`	`A`	2bp_deletion	frameshift_variant	5	A2,B110,B4,C25,C5
`Chr3:64396276`	`AGG`	`A`	2bp_deletion	CDS_variant	5	A2,B110,B4,C25,C5
`Chr3:64396364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B21,B83
`Chr3:64396374`	`A`	`ATG`	2bp_insertion	frameshift_variant	2	A14,C64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799959.1

490 aa

245

490

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 26-61 aa PF23622 LRR_At1g61320_AtMIF1 113-441 aa PF24758 LRR_At5g56370 120-277 aa

XP_057799960.1

489 aa

244

489

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 25-60 aa PF23622 LRR_At1g61320_AtMIF1 112-440 aa PF24758 LRR_At5g56370 119-276 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799959.1`	Pfam	`PF00646`	F-box	Domain	26	61	7.2e-09	35.9	F-box domain
`XP_057799959.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	113	441	4.6e-14	53.3	At1g61320/AtMIF1, LRR domain
`XP_057799959.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	120	277	1.4e-12	48.5	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057799960.1`	Pfam	`PF00646`	F-box	Domain	25	60	7.1e-09	35.9	F-box domain
`XP_057799960.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	112	440	4.5e-14	53.3	At1g61320/AtMIF1, LRR domain
`XP_057799960.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	119	276	1.3e-12	48.6	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943977.1
ATTCATCGATCTCTCTTTCATGGAGTATATATATTTCTCTTTAAATTCATTCATGCATATCTTTTTAGTTTAAGCAGTAGAATTCGTCGTGTGATTTAGGAAGAGAGAATTTATCGTCTTTTCCGATGGAAAAATCCAGAAAACAAAAGCAACAACGGATGGGAATATATGATGCTGTGATAAAAAATGGTGGTGATATTGATAGATTGCCTGATGATTTATTGATTAACATTCTGTCACACATGAGCATCAAGAGAGCT...

XM_057943976.1
TATTTCTCTTTAAATTCATTCATGCATATCTTTTTAGTTTAAGCAGTAGAATTCGTCGTGTGATTTAGGAAGAGAGAATTTATCGTCTTTTCCGATGGAAAAATCCAGAAAACAAAAGCAACAACGGATGCAGGGAATATATGATGCTGTGATAAAAAATGGTGGTGATATTGATAGATTGCCTGATGATTTATTGATTAACATTCTGTCACACATGAGCATCAAGAGAGCTGCGAGGACTAGTGTCCTCTCACATAAAT...

CDS

2 records

下载 CDS FASTA

LOC131015555
ATGGAAAAATCCAGAAAACAAAAGCAACAACGGATGCAGGGAATATATGATGCTGTGATAAAAAATGGTGGTGATATTGATAGATTGCCTGATGATTTATTGATTAACATTCTGTCACACATGAGCATCAAGAGAGCTGCGAGGACTAGTGTCCTCTCACATAAATGGAGATATCTTTGGAGGTTTTCCCATGGGACTCTTCGATTCGATGGAAAACTAATGGAAAAGGAAAAGTTGGAGTCTTGGGTGAATGGTGTGCT...

LOC131015555
ATGGAAAAATCCAGAAAACAAAAGCAACAACGGATGGGAATATATGATGCTGTGATAAAAAATGGTGGTGATATTGATAGATTGCCTGATGATTTATTGATTAACATTCTGTCACACATGAGCATCAAGAGAGCTGCGAGGACTAGTGTCCTCTCACATAAATGGAGATATCTTTGGAGGTTTTCCCATGGGACTCTTCGATTCGATGGAAAACTAATGGAAAAGGAAAAGTTGGAGTCTTGGGTGAATGGTGTGCTGGA...

Protein

2 records

下载 Protein FASTA

XP_057799959.1
MEKSRKQKQQRMQGIYDAVIKNGGDIDRLPDDLLINILSHMSIKRAARTSVLSHKWRYLWRFSHGTLRFDGKLMEKEKLESWVNGVLDLHQAPYVEGMIISVEGGVERNQKAYASTSRAVERWLNFAMQKEVQRLELNLLYEDKYKEHLWSRYPFPSLEELRSYSHSHSFCRLRSLRLSHVNITTDVVHHFLASCPDLEELCIQFSYHMMEDLRVVDPPSLRVLEITTCPYVESVEISAASLVSLTYGGPADSLLFKDYR...

XP_057799960.1
MEKSRKQKQQRMGIYDAVIKNGGDIDRLPDDLLINILSHMSIKRAARTSVLSHKWRYLWRFSHGTLRFDGKLMEKEKLESWVNGVLDLHQAPYVEGMIISVEGGVERNQKAYASTSRAVERWLNFAMQKEVQRLELNLLYEDKYKEHLWSRYPFPSLEELRSYSHSHSFCRLRSLRLSHVNITTDVVHHFLASCPDLEELCIQFSYHMMEDLRVVDPPSLRVLEITTCPYVESVEISAASLVSLTYGGPADSLLFKDYRD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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