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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr03G004719

Chromosome: Chr03 Coordinates: 64417066-64420306 Strand: - Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr03G004719
NameSmilChr03G004719
Descriptionuncharacterized SmilChr03G004719
Chromosome / SeqIDChr03 / NC_080389.1
Coordinates and Strand64417066 - 64420306 / -

ID Mapping

NCBI Gene IDLOC131015558
GeneID131015558
locus_tag-
NCBI NameLOC131015558
Original querySmilChr03G004719

Open ID mapping

Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
DescriptionMyosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:829352]; symbol=AT4G32190; hit=AT4G32190; species=arabidopsis; confidence=high
ProductMyosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:829352]; symbol=AT4G32190; hit=AT4G32190; species=arabidopsis; confidence=high
ArabidopsisAT4G32190 (AT4G32190)
Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:829352]
identity=47.6; qcov=1.01; evalue=0; confidence=high
RiceOs02g0186400
-
identity=34; qcov=0.97; evalue=7.56e-91; confidence=low
GOGO:0007131 (reciprocal meiotic recombination)
KEGG-
PfamPF28731 (PII1_C); PF28733 (PII1_coiled_coil)
InterPro-
eggNOG-
NRGeneID:131015558

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057799965.1
2 Chloroplast membrane 叶绿体膜 0.80000 XP_057799965.1
3 Nucleus 细胞核 0.00000 XP_057799965.1
4 Chromosome 染色体 0.00000 XP_057799965.1
5 Centromere 着丝粒 0.00000 XP_057799965.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr3:64417301 C T EMS_canonical_SNV CDS_variant 1 D11
Chr3:64417413 C T EMS_canonical_SNV CDS_variant 4 A2,B17,C31,C70
Chr3:64417434 C T EMS_canonical_SNV CDS_variant 1 B101
Chr3:64417533 G A EMS_canonical_SNV CDS_variant 5 B110,B111,B127,B81,C10
Chr3:64417633 C T EMS_canonical_SNV CDS_variant 2 C47,C51
Chr3:64417701 C T EMS_canonical_SNV CDS_variant 2 C47,C51
Chr3:64417811 G A EMS_canonical_SNV CDS_variant 1 A15
Chr3:64417823 G A EMS_canonical_SNV CDS_variant 2 B20,B80
Chr3:64417868 G A EMS_canonical_SNV CDS_variant 1 B68
Chr3:64417926 G A EMS_canonical_SNV CDS_variant 1 D11
Chr3:64417982 C T EMS_canonical_SNV CDS_variant 4 A2,B17,C31,C70
Chr3:64418013 C T EMS_canonical_SNV CDS_variant 4 A2,B17,C31,C70

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057799965.1
762 aa
N
1
381
762
PII1_coiled_coil
PII1_C
C
PF28733 PII1_coiled_coil 101-555 aa PF28731 PII1_C 592-754 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057799965.1 Pfam PF28733 PII1_coiled_coil Coiled-coil 101 555 4e-178 593.2 PII1 coiled-coil
XP_057799965.1 Pfam PF28731 PII1_C Domain 592 754 6.6e-57 193.0 Protein involved in starch initiation 1 C-terminal domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057943982.1
CATAAATAAGATGTGGTGACGTGTACATAAACTTGTGGATTTTTGGTGGTGATCTGAAACTCACACGTGCCAATCGCAACCATTTCTGTTCTTGCCTGCTAAGCTGCGCCGTTTCCCTCCATTTCTATTCCTTCCTCCACCTCCAAGCTTTCTCTCTCCTTCTATATAATATACTAACCCCTAACTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTATTGGTGCCATTTCCTGCCATGGTAGATGCAGAGTTTAT...

CDS

1 records

Download CDS FASTA
LOC131015558
ATGGCGCTTTCTGCCTCTATTCCCCTAGCTTCGTCTCCTCAGCTCTCGCAGTTATGCCATTCTAGTCCGAAATGGAAGCAGAAGAGAGTGGAGTTTCTGAAGCCACGTAGAAGAGAGCCTCAGTTGTGGTGGACTGTAAAATCGGTGTTAAATAGCAGAAGGCCCTTTAGTATTAGTGATAATGGGGCGAGTGAACCGGCTAGGGTTCTTTTGGAGAGGTTGTTTGCTGAGACTCAGAAGCTTGAGGAACAGATAGGTAG...

Protein

1 records

Download Protein FASTA
XP_057799965.1
MALSASIPLASSPQLSQLCHSSPKWKQKRVEFLKPRRREPQLWWTVKSVLNSRRPFSISDNGASEPARVLLERLFAETQKLEEQIGRDPRSPHVAELGVDLGKLESDLQAALVALKIKEEDLQDAERKVVSEFNEINLARKDLERREEEMAAATLKQGKLEEELRLANIELASQALEISDLKLQLKERDDEISASQLALSVKEEEIAKMKQELMEKTDGAANAESQLRFKSRLLDEANEVMEKQAVELQQLQRVIREKEE...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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JBrowse

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