当前解析结果
SmilChr03G004725| 统一新 Gene ID | SmilChr03G004725 |
|---|---|
| 名称 | SmilChr03G004725 |
| 描述 | ACT domain-containing protein ACR2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64445876 - 64448146 / + |
| NCBI Gene ID | LOC131015570 |
|---|---|
| GeneID | 131015570 |
| locus_tag | - |
| NCBI Name | LOC131015570 |
| 原始查询 | SmilChr03G004725 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ACT domain-containing protein ACR2 |
| 产物 | ACT domain-containing protein ACR2 |
| Arabidopsis | AT5G25320 (AT5G25320)ACT-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832604] identity=55.9; qcov=1.11; evalue=0; confidence=high |
| Rice | Os02g0555600- identity=46; qcov=0.987; evalue=5.57e-123; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF01842 (ACT); PF13740 (ACT_6); PF22754 (bHLH-TF_ACT-like_plant); PF24931 (ACT_ACR9_3rd); PF26956 (ACT_ACR_D1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015570 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057799979.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057799979.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057799979.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799979.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799979.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64446484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,D1 |
Chr3:64446727 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B41,C56 |
Chr3:64446727 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B41,C56 |
Chr3:64446835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr3:64446844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B139,B44 |
Chr3:64446850 |
G |
GCC |
2bp_insertion | frameshift_variant | 1 | B13 |
Chr3:64446850 |
G |
GCC |
2bp_insertion | CDS_variant | 1 | B13 |
Chr3:64446865 |
CG |
C |
1bp_deletion | frameshift_variant | 2 | B95,C80 |
Chr3:64446865 |
CG |
C |
1bp_deletion | CDS_variant | 2 | B95,C80 |
Chr3:64446905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,B7,B95 |
Chr3:64446908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C4 |
Chr3:64446969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799979.1PF24931
ACT_ACR9_3rd 27-97 aa
PF22754
bHLH-TF_ACT-like_plant 32-104 aa
PF26956
ACT_ACR_D1 34-107 aa
PF13740
ACT_6 122-170 aa
PF01842
ACT 124-156 aa
PF24931
ACT_ACR9_3rd 252-336 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799979.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 27 | 97 | 7e-19 | 68.4 | ACR9-like, ACT-like domain |
XP_057799979.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 32 | 104 | 3e-15 | 56.8 | Plant bHLH transcription factor, ACT-like domain |
XP_057799979.1 |
Pfam | PF26956 |
ACT_ACR_D1 | Domain | 34 | 107 | 9.7e-42 | 141.4 | ACR family N-terminal ACT domain |
XP_057799979.1 |
Pfam | PF13740 |
ACT_6 | Domain | 122 | 170 | 2.1e-09 | 37.8 | ACT domain |
XP_057799979.1 |
Pfam | PF01842 |
ACT | Domain | 124 | 156 | 5e-21 | 74.8 | ACT domain |
XP_057799979.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 252 | 336 | 7e-19 | 68.4 | ACR9-like, ACT-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。