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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004738

染色体: Chr03 坐标: 64499982-64503334 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004738
名称SmilChr03G004738
描述uncharacterized SmilChr03G004738
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向64499982 - 64503334 / +

ID 对照

NCBI Gene IDLOC131015576
GeneID131015576
locus_tag-
NCBI NameLOC131015576
原始查询SmilChr03G004738

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229]; symbol=ECT7; hit=AT1G48110; species=arabidopsis; confidence=weak
产物evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229]; symbol=ECT7; hit=AT1G48110; species=arabidopsis; confidence=weak
ArabidopsisAT1G48110 (ECT7)
evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229]
identity=62.2; qcov=0.263; evalue=3.31e-55; confidence=weak
RiceOs03g0317000
-
identity=62.1; qcov=0.258; evalue=1.68e-53; confidence=weak
GOGO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0061157 (mRNA destabilization)
KEGG-
PfamPF04146 (YTH); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro-
eggNOG-
NRGeneID:131015576

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057799988.1
2 Cytoplasm 细胞质 0.60000 XP_057799988.1
3 Cytosol 细胞质基质 0.40000 XP_057799988.1
4 Chromosome 染色体 0.00000 XP_057799988.1
5 Centromere 着丝粒 0.00000 XP_057799988.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:64500157 C T EMS_canonical_SNV CDS_variant 1 B104
Chr3:64500720 G A EMS_canonical_SNV CDS_variant 1 C24
Chr3:64500725 C T EMS_canonical_SNV CDS_variant 4 B114,C16,C46,C53
Chr3:64500731 G A EMS_canonical_SNV CDS_variant 3 C16,C46,C53
Chr3:64500820 C T EMS_canonical_SNV CDS_variant 3 A15,B80,B91
Chr3:64500886 TGC T 2bp_deletion frameshift_variant 104 A10,A11,A14,A16,A2,A20,A21,A24,A3,A5,A6,A9,B1,B104,B109,B113,B117,B126,B135,B137,B139,B16,B17,B2,B20,B21,B26,B3,B30,B31,B33,B34,B37,B39,B41,B42,B43,B45,B5,B50,B57,B6,B63,B64,B65,B67,B68,B69,B72,B74,B76,B78,B80,B81,B83,B87,B89,B9,B90,B91,B95,C11,C14,C16,C19,C24,C27,C29,C3,C30,C36,C38,C4,C42,C44,C46,C48,C49,C5,C50,C51,C53,C54,C56,C58,C60,C62,C65,C66,C68,C7,C71,C74,C75,C79,C80,C82,C87,D11,D3,D4,D5,D6,D7
Chr3:64500898 ATG A 2bp_deletion frameshift_variant 1 B83
Chr3:64500898 ATG A 2bp_deletion CDS_variant 1 B83
Chr3:64501166 AT A 1bp_deletion frameshift_variant 1 B27
Chr3:64501166 AT A 1bp_deletion CDS_variant 1 B27
Chr3:64501168 G A EMS_canonical_SNV CDS_variant 1 B27
Chr3:64501246 G A EMS_canonical_SNV CDS_variant 1 C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799988.1
597 aa
N
1
298
597
FBA_3
FBA_1
YTH
C
PF08268 FBA_3 29-205 aa PF07734 FBA_1 45-197 aa PF04146 YTH 427-561 aa
XP_057799989.1
597 aa
N
1
298
597
FBA_3
FBA_1
YTH
C
PF08268 FBA_3 29-205 aa PF07734 FBA_1 45-197 aa PF04146 YTH 427-561 aa
XP_057799990.1
597 aa
N
1
298
597
FBA_3
FBA_1
YTH
C
PF08268 FBA_3 29-205 aa PF07734 FBA_1 45-197 aa PF04146 YTH 427-561 aa
XP_057799991.1
594 aa
N
1
297
594
FBA_3
FBA_1
YTH
C
PF08268 FBA_3 29-205 aa PF07734 FBA_1 45-197 aa PF04146 YTH 424-558 aa
XP_057799992.1
594 aa
N
1
297
594
FBA_3
FBA_1
YTH
C
PF08268 FBA_3 29-205 aa PF07734 FBA_1 45-197 aa PF04146 YTH 424-558 aa
XP_057799993.1
594 aa
N
1
297
594
FBA_3
FBA_1
YTH
C
PF08268 FBA_3 29-205 aa PF07734 FBA_1 45-197 aa PF04146 YTH 424-558 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799988.1 Pfam PF08268 FBA_3 Repeat 29 205 3.2e-08 33.7 F-box associated beta propeller domain
XP_057799988.1 Pfam PF07734 FBA_1 Repeat 45 197 2.9e-16 60.1 F-box associated beta propeller domain
XP_057799988.1 Pfam PF04146 YTH Domain 427 561 2.1e-34 118.9 YT521-B-like domain
XP_057799989.1 Pfam PF08268 FBA_3 Repeat 29 205 3.2e-08 33.7 F-box associated beta propeller domain
XP_057799989.1 Pfam PF07734 FBA_1 Repeat 45 197 2.9e-16 60.1 F-box associated beta propeller domain
XP_057799989.1 Pfam PF04146 YTH Domain 427 561 2.1e-34 118.9 YT521-B-like domain
XP_057799990.1 Pfam PF08268 FBA_3 Repeat 29 205 3.2e-08 33.7 F-box associated beta propeller domain
XP_057799990.1 Pfam PF07734 FBA_1 Repeat 45 197 2.9e-16 60.1 F-box associated beta propeller domain
XP_057799990.1 Pfam PF04146 YTH Domain 427 561 2.1e-34 118.9 YT521-B-like domain
XP_057799991.1 Pfam PF08268 FBA_3 Repeat 29 205 3.2e-08 33.7 F-box associated beta propeller domain
XP_057799991.1 Pfam PF07734 FBA_1 Repeat 45 197 2.8e-16 60.1 F-box associated beta propeller domain
XP_057799991.1 Pfam PF04146 YTH Domain 424 558 2.1e-34 118.9 YT521-B-like domain
XP_057799992.1 Pfam PF08268 FBA_3 Repeat 29 205 3.2e-08 33.7 F-box associated beta propeller domain
XP_057799992.1 Pfam PF07734 FBA_1 Repeat 45 197 2.8e-16 60.1 F-box associated beta propeller domain
XP_057799992.1 Pfam PF04146 YTH Domain 424 558 2.1e-34 118.9 YT521-B-like domain
XP_057799993.1 Pfam PF08268 FBA_3 Repeat 29 205 3.2e-08 33.7 F-box associated beta propeller domain
XP_057799993.1 Pfam PF07734 FBA_1 Repeat 45 197 2.8e-16 60.1 F-box associated beta propeller domain
XP_057799993.1 Pfam PF04146 YTH Domain 424 558 2.1e-34 118.9 YT521-B-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057944008.1
TTGGGACCCCTATTTTCTTCGGGGCCCCGTGCAGCCCAGAACCGAGTCATATATATATTGCCTCTTTCAAACAACACGAACGTTTATGCTCAAAAAAAGGTTTAGGGTTCATTCCCTTTCTTCTTCTTCGAAATCTATCAATTTTTGATCGACGATGAATAATTCCGACGAGAAACGGATTCTTGTGATGCGTAGCAATGGAAATCGTGGTATGTCTTATGTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATCTCTG...
XM_057944009.1
TTGGGACCCCTATTTTCTTCGGGGCCCCGTGCAGCCCAGAACCGAGTCATATATATATTGCCTCTTTCAAACAACACGAACGTTTATGCTCAAAAAAAGGTTTAGGGTTCATTCCCTTTCTTCTTCTTCGAAATCTATCAATTTTTGATCGACGATGAATAATTCCGACGAGAAACGGATTCTTGTGATGCGTAGCAATGGAAATCGTGGTATGTCTTATGTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATCTCTG...

CDS

6 records

下载 CDS FASTA
LOC131015576
ATGAATAATTCCGACGAGAAACGGATTCTTGTGATGCGTAGCAATGGAAATCGTGGTATGTCTTATGTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATCTCTGAAGAAAGTTTCGACCTCCCTTTTTTGGATCCAAACCAACCTATTCGTTTTAACAGTTGCGGGGGTTTGTTGTTATTCATCGATCGTACTGACCATAGTTATCTTTGCAACCCCACAACCAAACAGGTTCAGATCTTTCCTCCTAAGGAAGCCTC...
LOC131015576
ATGAATAATTCCGACGAGAAACGGATTCTTGTGATGCGTAGCAATGGAAATCGTGGTATGTCTTATGTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATCTCTGAAGAAAGTTTCGACCTCCCTTTTTTGGATCCAAACCAACCTATTCGTTTTAACAGTTGCGGGGGTTTGTTGTTATTCATCGATCGTACTGACCATAGTTATCTTTGCAACCCCACAACCAAACAGGTTCAGATCTTTCCTCCTAAGGAAGCCTC...

Protein

6 records

下载 Protein FASTA
XP_057799988.1
MNNSDEKRILVMRSNGNRGMSYVTPLSPRDLSEISEESFDLPFLDPNQPIRFNSCGGLLLFIDRTDHSYLCNPTTKQVQIFPPKEASPIPNYLTYLAGACVGYDSKSDDYKILRIWDRNYCASGPCYPIRSFELYSLRDDSLKEIPSPAFMCNSGIGNITYVRGKCYWLSLPGSRVISFDYSEESFSYLPLPRKAYTLRFSLVNFYDKEDLLGIVFCGRRGASYEDPTPLPLGSEVGYYFEAWVWREGLGCWDTMFNVSL...
XP_057799989.1
MNNSDEKRILVMRSNGNRGMSYVTPLSPRDLSEISEESFDLPFLDPNQPIRFNSCGGLLLFIDRTDHSYLCNPTTKQVQIFPPKEASPIPNYLTYLAGACVGYDSKSDDYKILRIWDRNYCASGPCYPIRSFELYSLRDDSLKEIPSPAFMCNSGIGNITYVRGKCYWLSLPGSRVISFDYSEESFSYLPLPRKAYTLRFSLVNFYDKEDLLGIVFCGRRGASYEDPTPLPLGSEVGYYFEAWVWREGLGCWDTMFNVSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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