当前解析结果
SmilChr03G004746| 统一新 Gene ID | SmilChr03G004746 |
|---|---|
| 名称 | SmilChr03G004746 |
| 描述 | CHD3-type chromatin-remodeling factor PICKLE-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64560572 - 64576340 / + |
| NCBI Gene ID | LOC131015594 |
|---|---|
| GeneID | 131015594 |
| locus_tag | - |
| NCBI Name | LOC131015594 |
| 原始查询 | SmilChr03G004746 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CHD3-type chromatin-remodeling factor PICKLE-like |
| 产物 | CHD3-type chromatin-remodeling factor PICKLE-like |
| Arabidopsis | AT2G25170 (PKL)chromatin remodeling factor CHD3 (PICKLE) [Source:NCBI gene (formerly Entrezgene);Acc:817055] identity=63.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0497100 (CHR729)- identity=42.3; qcov=0.641; evalue=0; confidence=medium |
| GO | GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0000785 (chromatin); GO:0003677 (DNA binding); GO:0003682 (chromatin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0016887 (ATP hydrolysis activity); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF00385 (Chromo); PF00628 (PHD); PF04851 (ResIII); PF06461 (CHDII_SANT-like); PF06465 (DUF1087); PF11496 (HDA2-3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015594 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800011.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057800011.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057800011.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057800011.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057800011.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64562671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr3:64562756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C49 |
Chr3:64563855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B110,D8 |
Chr3:64564378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr3:64564621 |
GA |
G |
1bp_deletion | frameshift_variant | 32 | A18,A5,B106,B109,B115,B119,B13,B131,B133,B137,B15,B24,B59,B62,B68,B69,B73,B74,B75,B78,B81,B96,B98,C10,C15,C23,C46,C51,C58,C62,D11,D8 |
Chr3:64564650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B107,B86,C11,C69 |
Chr3:64564696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B110,B32,C5,D5 |
Chr3:64564872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C40 |
Chr3:64565780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,D11 |
Chr3:64566512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr3:64566970 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | A14,A9,B29,B3,B41,B42,B6,B62,B83,B93,C19,C51,C6 |
Chr3:64572768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800011.1PF00628
PHD 56-97 aa
PF00385
Chromo 105-156 aa
PF00385
Chromo 195-242 aa
PF04851
ResIII 286-466 aa
PF00176
SNF2-rel_dom 289-584 aa
PF11496
HDA2-3 536-750 aa
PF00271
Helicase_C 607-720 aa
PF06465
DUF1087 841-902 aa
PF06461
CHDII_SANT-like 933-1057 aa
XP_057800012.1PF00385
Chromo 61-108 aa
PF04851
ResIII 152-332 aa
PF00176
SNF2-rel_dom 155-450 aa
PF11496
HDA2-3 402-616 aa
PF00271
Helicase_C 473-586 aa
PF06465
DUF1087 707-768 aa
PF06461
CHDII_SANT-like 799-923 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800011.1 |
Pfam | PF00628 |
PHD | Domain | 56 | 97 | 1.3e-05 | 25.8 | PHD-finger |
XP_057800011.1 |
Pfam | PF00385 |
Chromo | Domain | 105 | 156 | 3.6e-22 | 78.8 | Chromo (CHRromatin Organisation MOdifier) domain |
XP_057800011.1 |
Pfam | PF00385 |
Chromo | Domain | 195 | 242 | 3.6e-22 | 78.8 | Chromo (CHRromatin Organisation MOdifier) domain |
XP_057800011.1 |
Pfam | PF04851 |
ResIII | Family | 286 | 466 | 2e-11 | 44.8 | Type III restriction enzyme, res subunit |
XP_057800011.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 289 | 584 | 4.7e-84 | 282.6 | SNF2-related domain |
XP_057800011.1 |
Pfam | PF11496 |
HDA2-3 | Domain | 536 | 750 | 3e-10 | 40.5 | Class II histone deacetylase complex subunits 2 and 3 |
XP_057800011.1 |
Pfam | PF00271 |
Helicase_C | Domain | 607 | 720 | 1.1e-24 | 87.5 | Helicase conserved C-terminal domain |
XP_057800011.1 |
Pfam | PF06465 |
DUF1087 | Domain | 841 | 902 | 8e-25 | 87.4 | CHD subfamily II, DUF1087 |
XP_057800011.1 |
Pfam | PF06461 |
CHDII_SANT-like | Domain | 933 | 1057 | 1.1e-51 | 175.0 | CHD subfamily II, SANT-like domain |
XP_057800012.1 |
Pfam | PF00385 |
Chromo | Domain | 61 | 108 | 9.9e-15 | 54.9 | Chromo (CHRromatin Organisation MOdifier) domain |
XP_057800012.1 |
Pfam | PF04851 |
ResIII | Family | 152 | 332 | 1.6e-11 | 45.1 | Type III restriction enzyme, res subunit |
XP_057800012.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 155 | 450 | 3.9e-84 | 282.9 | SNF2-related domain |
XP_057800012.1 |
Pfam | PF11496 |
HDA2-3 | Domain | 402 | 616 | 2.5e-10 | 40.7 | Class II histone deacetylase complex subunits 2 and 3 |
XP_057800012.1 |
Pfam | PF00271 |
Helicase_C | Domain | 473 | 586 | 9.3e-25 | 87.7 | Helicase conserved C-terminal domain |
XP_057800012.1 |
Pfam | PF06465 |
DUF1087 | Domain | 707 | 768 | 7e-25 | 87.6 | CHD subfamily II, DUF1087 |
XP_057800012.1 |
Pfam | PF06461 |
CHDII_SANT-like | Domain | 799 | 923 | 9.4e-52 | 175.2 | CHD subfamily II, SANT-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。