Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004749`

染色体: Chr03 坐标: 64581801-64585901 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004749`
名称	SmilChr03G004749
描述	aspartate aminotransferase, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64581801 - 64585901 / `+`

ID 对照

NCBI Gene ID	`LOC131015595`
GeneID	`131015595`
locus_tag	`-`
NCBI Name	`LOC131015595`
原始查询	`SmilChr03G004749`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartate aminotransferase, chloroplastic
产物	aspartate aminotransferase%2C chloroplastic
Arabidopsis	`AT4G31990` (ASP5) aspartate aminotransferase 5 [Source:NCBI gene (formerly Entrezgene);Acc:829330] identity=79.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0797500` (AST) - identity=81.4; qcov=0.915; evalue=0; confidence=high
GO	GO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131015595

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057800013.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057800013.1`
3	Nucleus	细胞核	0.00000	`XP_057800013.1`
4	Chromosome	染色体	0.00000	`XP_057800013.1`
5	Centromere	着丝粒	0.00000	`XP_057800013.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64582161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:64582182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C82
`Chr3:64582347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,C13,C44,C82
`Chr3:64584843`	`AC`	`A`	1bp_deletion	frameshift_variant	171	A1,A11,A13,A14,A15,A16,A18,A2,A22,A23,A25,A3,A4,A5,A6,A7,A9,B1,B101,B104,B106,B108,B109,B110,B111,B114,B115,B118,B119,B120,B121,B122,B124,B126,B127,B128,B129,B13,B130,B133,B134,B136,B137,B139,B14,B15,B16,B17,B18,B21,B23,B25,B26,B27,B3,B30,B34,B35,B37,B38,B39,B41,B42,B43,B44,B45,B46,B47,B48,B49,B51,B54,B55,B56,B57,B59,B6,B60,B61,B62,B63,B64,B65,B68,B69,B7,B72,B73,B74,B75,B76,B77,B79,B82,B83,B84,B87,B88,B89,B91,B93,B95,B96,B97,B99,C1,C11,C12,C14,C15,C19,C2,C20,C21,C22,C23,C24,C28,C3,C31,C32,C34,C35,C37,C39,C4,C40,C41,C44,C45,C47,C48,C49,C5,C50,C51,C52,C56,C57,C59,C6,C60,C61,C63,C67,C68,C69,C70,C71,C72,C73,C74,C76,C77,C78,C8,C81,C82,C84,C85,C86,C87,C9,D1,D11,D2,D3,D6,D7,D8,D9
`Chr3:64585202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr3:64585267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr3:64585284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:64585659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:64585686`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,B22,B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800013.1

459 aa

230

459

Aminotran_1_2

PF00155 Aminotran_1_2 84-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800013.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	84	451	1.2e-93	314.9	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944030.1
TTACATCCAATTATTTATTCCGATAGCGCATGTCTATAAATATAGTGAGTTTGCGGTTACTGTGAAAGCCAAAACTGTGCTCGTTTTTATCGCCCTCATTTCCTTTCTCACTCTCGTTGTTGTTGTCGACGTTAGCGGATTCCATCTGCTCCGCTGAAACGATGGCTTCAGCTTTTGTCTCGCTCACTTCAACTTCTCCGATGGCTTTGCTAGATCCTCTCAAGGCAAATTCAAGGCTTGGAGCTTCCAATCAGATGACG...

CDS

1 records

下载 CDS FASTA

LOC131015595
ATGGCTTCAGCTTTTGTCTCGCTCACTTCAACTTCTCCGATGGCTTTGCTAGATCCTCTCAAGGCAAATTCAAGGCTTGGAGCTTCCAATCAGATGACGTTTTTGGGGAAGAATTTTATCAAGGCCAAGCCTTTCACTAGGACGAGCATGGCCGTTGCCGTTGAGGTTTCCAGGTTCAATGAACTAACAATGGCTCCTCCAGATCCCATTCTTGGAGTTTCTGAAGCATTCCGAGCTGATACTCATGAAATGAAGCTTAA...

Protein

1 records

下载 Protein FASTA

XP_057800013.1
MASAFVSLTSTSPMALLDPLKANSRLGASNQMTFLGKNFIKAKPFTRTSMAVAVEVSRFNELTMAPPDPILGVSEAFRADTHEMKLNLGVGAYRTEDLQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKATAELLFGAESAVLQQQRVATVQGLSGTGSLRLAAVLIERYFPGATVLISSPTWGNHKNIFGDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEVIADVIQE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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