Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000003`

染色体: Chr04 坐标: 63610-66577 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000003`
名称	SmilChr04G000003
描述	pentatricopeptide repeat-containing protein At1g11290, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	63610 - 66577 / `-`

ID 对照

NCBI Gene ID	`LOC131022811`
GeneID	`131022811`
locus_tag	`-`
NCBI Name	`LOC131022811`
原始查询	`SmilChr04G000003`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g11290, chloroplastic
产物	pentatricopeptide repeat-containing protein At1g11290%2C chloroplastic
Arabidopsis	`AT1G11290` (CRR22) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837671] identity=63.3; qcov=0.999; evalue=0; confidence=high
Rice	`Os06g0112000` - identity=59.2; qcov=0.885; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131022811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057808318.1`
2	Chloroplast	叶绿体	0.20000	`XP_057808318.1`
3	Nucleus	细胞核	0.00000	`XP_057808318.1`
4	Chromosome	染色体	0.00000	`XP_057808318.1`
5	Centromere	着丝粒	0.00000	`XP_057808318.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:63998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:64852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C54
`Chr4:65128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,B31
`Chr4:65484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr4:65495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,A2,B104,B85
`Chr4:65629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:65781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,B59,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808318.1

800 aa

400

800

PPR

PPR_3

PPR

PPR_2

PPR

PPR_2

PPR_3

PPR

TPR_24

PPR_3

PPR

PPR_2

PPR

PPR_2

PPR

E_motif

Eplus_motif

DYW_deaminase

PF01535 PPR 94-119 aa PF13812 PPR_3 94-139 aa PF01535 PPR 164-190 aa PF13041 PPR_2 191-234 aa PF01535 PPR 193-222 aa PF01535 PPR 266-291 aa PF13041 PPR_2 292-339 aa PF13812 PPR_3 293-330 aa PF01535 PPR 294-324 aa PF23276 TPR_24 296-387 aa PF13812 PPR_3 315-374 aa PF01535 PPR 367-390 aa PF13041 PPR_2 394-440 aa PF01535 PPR 395-424 aa PF01535 PPR 467-493 aa PF13041 PPR_2 495-541 aa PF01535 PPR 497-523 aa PF01535 PPR 531-558 aa PF01535 PPR 568-592 aa PF20431 E_motif 611-672 aa PF20430 Eplus_motif 678-705 aa PF14432 DYW_deaminase 709-800 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	94	119	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF13812`	PPR_3	Repeat	94	139	1.6e-35	121.7	Pentatricopeptide repeat domain
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	164	190	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF13041`	PPR_2	Repeat	191	234	3.2e-78	258.4	PPR repeat family
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	193	222	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	266	291	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF13041`	PPR_2	Repeat	292	339	3.2e-78	258.4	PPR repeat family
`XP_057808318.1`	Pfam	`PF13812`	PPR_3	Repeat	293	330	1.6e-35	121.7	Pentatricopeptide repeat domain
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	294	324	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF23276`	TPR_24	Repeat	296	387	1.4e-19	71.0	Pentatricopeptide repeat-containing protein
`XP_057808318.1`	Pfam	`PF13812`	PPR_3	Repeat	315	374	1.6e-35	121.7	Pentatricopeptide repeat domain
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	367	390	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF13041`	PPR_2	Repeat	394	440	3.2e-78	258.4	PPR repeat family
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	395	424	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	467	493	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF13041`	PPR_2	Repeat	495	541	3.2e-78	258.4	PPR repeat family
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	497	523	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	531	558	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF01535`	PPR	Repeat	568	592	1.7e-77	251.2	PPR repeat
`XP_057808318.1`	Pfam	`PF20431`	E_motif	Repeat	611	672	8.3e-19	68.3	E motif
`XP_057808318.1`	Pfam	`PF20430`	Eplus_motif	Motif	678	705	4.2e-06	27.1	E+ motif
`XP_057808318.1`	Pfam	`PF14432`	DYW_deaminase	Domain	709	800	6.8e-39	132.3	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952335.1
TTTCAATTAAAAATAACTAGCTCATTAAGTATCTATTATTAAGTTATCTGTAGTGTATTGAATCTATTTAATGTATAAATATATGGTTTGTTTTTCTTAAAACAAGCTGTATGGATTGTCCAAAATATTTTTGATTCAATGGCTATTGCCACGAACGCTTGTGAAAATTTAGTCCCTAATGAGAATTCGTGACTCCGCCAAGAAGATACAAATACCGGAGTTGAGATGTGAGTTTCGATGTATTAATCCAATTGGATGGG...

CDS

1 records

下载 CDS FASTA

LOC131022811
ATGAGCTCGCTGCTACTGCCGCGCACAGCGCCGCCACCGCCATTCCTTTCAGCAAGGGTGTACATCCCTCCACATGTATACAAACACCCAGCCGCAATCCTCCTAGAGCTCTGCGCTTCCGTGAAAGAGCTCCACCAATTCCTCCCTCTCATCATCAAAAACGGCCTCTACAACGAGCACCTCTTCCAAACCAAGCTCGTCAGCCTCTTCTGCAAATTCGGCAGCATGACCGACGCCGCCAAAGTCTTCGACTCCATTCA...

Protein

1 records

下载 Protein FASTA

XP_057808318.1
MSSLLLPRTAPPPPFLSARVYIPPHVYKHPAAILLELCASVKELHQFLPLIIKNGLYNEHLFQTKLVSLFCKFGSMTDAAKVFDSIQTKVDPLYHTLLKGYAHHSNLDGAFNFFARMKHDAVEPVIYNYSYLLKACADNFDSRRGREIHAQLVLSGLSANLYAMTSLMNLYAKCGAVQDACKMFERMPVRDLVCWNTVIAGFAQNGMPKKALDLVVRMQEEGHSPDLVTVVSILPAIADLGDLRIGRSIHACVFRRGLES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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