Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000006`

染色体: Chr04 坐标: 91819-110192 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000006`
名称	SmilChr04G000006
描述	glycine--tRNA ligase, chloroplastic/mitochondrial 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	91819 - 110192 / `+`

ID 对照

NCBI Gene ID	`LOC131022815`
GeneID	`131022815`
locus_tag	`-`
NCBI Name	`LOC131022815`
原始查询	`SmilChr04G000006`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycine--tRNA ligase, chloroplastic/mitochondrial 2
产物	glycine--tRNA ligase%2C chloroplastic/mitochondrial 2
Arabidopsis	`AT3G48110` (EDD1) glycine-tRNA ligase [Source:NCBI gene (formerly Entrezgene);Acc:823966] identity=72.2; qcov=1; evalue=0; confidence=high
Rice	`Os06g0103600` - identity=64.5; qcov=1; evalue=0; confidence=high
GO	GO:0004820 (glycine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0006426 (glycyl-tRNA aminoacylation); GO:0009570 (chloroplast stroma)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF02091 (tRNA-synt_2e); PF02092 (tRNA_synt_2f)
InterPro	-
eggNOG	-
NR	GeneID:131022815

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057808323.1`
2	Cytoplasm	细胞质	1.00000	`XP_057808324.1`
3	Cytosol	细胞质基质	1.00000	`XP_057808324.1`
4	Chloroplast stroma	叶绿体基质	0.40000	`XP_057808323.1`
5	Nucleus	细胞核	0.00000	`XP_057808323.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:92106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr4:92184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr4:92737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B28,B59,C26
`Chr4:93408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr4:94781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,A2,B85
`Chr4:95015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,C25,C4,C75,D8
`Chr4:95952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr4:96435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr4:98383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C1,C31
`Chr4:103418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B11,B44,B75
`Chr4:103424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B28,B59,C17,C26,C6
`Chr4:104095`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808323.1

1075 aa

538

1075

tRNA-synt_2e

tRNA_synt_2f

PF02091 tRNA-synt_2e 81-358 aa PF02092 tRNA_synt_2f 394-938 aa

XP_057808324.1

867 aa

434

867

tRNA-synt_2e

tRNA_synt_2f

PF02091 tRNA-synt_2e 1-150 aa PF02092 tRNA_synt_2f 186-730 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808323.1`	Pfam	`PF02091`	tRNA-synt_2e	Domain	81	358	3.5e-132	440.6	Glycyl-tRNA synthetase alpha subunit
`XP_057808323.1`	Pfam	`PF02092`	tRNA_synt_2f	Family	394	938	2.4e-183	611.7	Glycyl-tRNA synthetase beta subunit
`XP_057808324.1`	Pfam	`PF02091`	tRNA-synt_2e	Domain	1	150	8.6e-57	193.2	Glycyl-tRNA synthetase alpha subunit
`XP_057808324.1`	Pfam	`PF02092`	tRNA_synt_2f	Family	186	730	1.3e-183	612.5	Glycyl-tRNA synthetase beta subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009101434.1
GGCTATAATAAAACGGCGGATAAACCCTCCCTCTCTGTTAAACCAGAGTTTCCCTCTCTCTCTCTCTCTCTACCCCATCCCACTCTGCTGTTCCGCTCTCCACTCACGCGATAGTCCTCGCTCATTCTACAATGGCGATACTATCACTGCCGCTGGTGACTTCGATTCTCAAAAAATCGCCGAGGGATTACAAACACCACCTCTCCTTCATCATGGCAGTAGGTCGGAGGAGTATTTTCCCGAATTCGCCTGTGATTTTC...

XR_009101435.1
GGCTATAATAAAACGGCGGATAAACCCTCCCTCTCTGTTAAACCAGAGTTTCCCTCTCTCTCTCTCTCTCTACCCCATCCCACTCTGCTGTTCCGCTCTCCACTCACGCGATAGTCCTCGCTCATTCTACAATGGCGATACTATCACTGCCGCTGGTGACTTCGATTCTCAAAAAATCGCCGAGGGATTACAAACACCACCTCTCCTTCATCATGGCAGTAGGTCGGAGGAGTATTTTCCCGAATTCGCCTGTGATTTTC...

CDS

2 records

下载 CDS FASTA

LOC131022815
ATGGCGATACTATCACTGCCGCTGGTGACTTCGATTCTCAAAAAATCGCCGAGGGATTACAAACACCACCTCTCCTTCATCATGGCAGTAGGTCGGAGGAGTATTTTCCCGAATTCGCCTGTGATTTTCCGACGAAATCGGTTTTCGTCCGCGGCGGCCAAACTCTCCCTCTCCGCCAACGCCCAGGCCACCGAACAGGACAGTCAGAAGCCGGCGTTGTCGTCATCGTCTACACTCACTTTCCAACAAGCCATTCAGCG...

LOC131022815
ATGGATGGAATGGAGATTACTCAATTCACCTACTTCCAGCAGGCTGGAAGTCTTCCACTTATGCCTGTTTCAGTTGAAATTACCTATGGTCTTGAACGAATCATTATGTTGCTTCAGGGAGTTGATCACTTCAAGAAAATTCAATATGCTGATGGGATAACATATGGAGAGCTTTTTCTGGAAAATGAGAAGGAGATGAGTGCATATTATCTGGAGCATGCCAGTGTAGATCACATTCATAGTCATTTCGATCTATTTGA...

Protein

2 records

下载 Protein FASTA

XP_057808323.1
MAILSLPLVTSILKKSPRDYKHHLSFIMAVGRRSIFPNSPVIFRRNRFSSAAAKLSLSANAQATEQDSQKPALSSSSTLTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVNDHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLPLMPVSVEITYGLERIIMLLQGVDHFKKIQYADG...

XP_057808324.1
MDGMEITQFTYFQQAGSLPLMPVSVEITYGLERIIMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHASVDHIHSHFDLFEAEARRLLDLGLAIPAYDQLLKTSHAFNVLDSRGFVGVTERARYFGRMRSLARQCAQQWLKTRESLGHPLGIASNPNHLGFQKEDIEELKKKVSERPRPFILEIGTEELPPNDVVNSCNQLKDLVKQLLEKQRLSHGDVETCGTPRRIVVHVDNLSDKQVSNQVEVRGPPASKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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