当前解析结果
SmilChr04G000030| 统一新 Gene ID | SmilChr04G000030 |
|---|---|
| 名称 | SmilChr04G000030 |
| 描述 | protein ARABIDILLO 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 302397 - 310348 / - |
| NCBI Gene ID | LOC131022840 |
|---|---|
| GeneID | 131022840 |
| locus_tag | - |
| NCBI Name | LOC131022840 |
| 原始查询 | SmilChr04G000030 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ARABIDILLO 1-like |
| 产物 | protein ARABIDILLO 1-like |
| Arabidopsis | AT2G44900 (ARABIDILLO-1)ARABIDILLO-1 [Source:NCBI gene (formerly Entrezgene);Acc:819099] identity=67.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os10g0563200- identity=71.5; qcov=0.631; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF00646 (F-box); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022840 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.40000 | XP_057808360.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057808360.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057808360.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057808360.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808360.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:302637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:302721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C7 |
Chr4:303345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr4:303585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:303591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C76 |
Chr4:303629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B12,B98,C85 |
Chr4:305798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B55,B93 |
Chr4:306100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B117,B70,B79,C35 |
Chr4:306338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:306379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr4:307619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:307640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B55,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808360.1PF00646
F-box 36-77 aa
PF12937
F-box-like 36-82 aa
PF00514
Arm 457-492 aa
PF00514
Arm 502-539 aa
PF00514
Arm 548-581 aa
PF00514
Arm 586-625 aa
PF00514
Arm 674-710 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808360.1 |
Pfam | PF00646 |
F-box | Domain | 36 | 77 | 1.2e-08 | 35.2 | F-box domain |
XP_057808360.1 |
Pfam | PF12937 |
F-box-like | Domain | 36 | 82 | 1.2e-10 | 41.7 | F-box-like |
XP_057808360.1 |
Pfam | PF00514 |
Arm | Repeat | 457 | 492 | 8.4e-53 | 175.5 | Armadillo/beta-catenin-like repeat |
XP_057808360.1 |
Pfam | PF00514 |
Arm | Repeat | 502 | 539 | 8.4e-53 | 175.5 | Armadillo/beta-catenin-like repeat |
XP_057808360.1 |
Pfam | PF00514 |
Arm | Repeat | 548 | 581 | 8.4e-53 | 175.5 | Armadillo/beta-catenin-like repeat |
XP_057808360.1 |
Pfam | PF00514 |
Arm | Repeat | 586 | 625 | 8.4e-53 | 175.5 | Armadillo/beta-catenin-like repeat |
XP_057808360.1 |
Pfam | PF00514 |
Arm | Repeat | 674 | 710 | 8.4e-53 | 175.5 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。