Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000036`

染色体: Chr04 坐标: 335216-337791 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000036`
名称	SmilChr04G000036
描述	actin-related protein 2/3 complex subunit 5A-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	335216 - 337791 / `+`

ID 对照

NCBI Gene ID	`LOC131022851`
GeneID	`131022851`
locus_tag	`-`
NCBI Name	`LOC131022851`
原始查询	`SmilChr04G000036`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	actin-related protein 2/3 complex subunit 5A-like
产物	actin-related protein 2/3 complex subunit 5A-like
Arabidopsis	`AT4G01710` (CRK) ARP2/3 complex 16 kDa subunit (p16-Arc) [Source:NCBI gene (formerly Entrezgene);Acc:828087] identity=80.7; qcov=0.672; evalue=2.77e-48; confidence=medium
Rice	`Os11g0557900` - identity=73.9; qcov=0.672; evalue=3.24e-43; confidence=medium
GO	GO:0005737 (cytoplasm); GO:0005885 (Arp2/3 protein complex); GO:0015629 (actin cytoskeleton); GO:0030833 (regulation of actin filament polymerization); GO:0034314 (Arp2/3 complex-mediated actin nucleation); GO:0051015 (actin filament binding)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF04699 (P16-Arc)
InterPro	-
eggNOG	-
NR	GeneID:131022851

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057808377.1`
2	Nucleus	细胞核	1.00000	`XP_057808378.1`
3	Cytosol	细胞质基质	0.20000	`XP_057808377.1`
4	Chromosome	染色体	0.00000	`XP_057808378.1`
5	Centromere	着丝粒	0.00000	`XP_057808378.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:335371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:335387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B13,B30,B77
`Chr4:335403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr4:335412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:335421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B22,B78,C16,C34
`Chr4:335451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:335545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr4:335779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B111
`Chr4:336426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:336450`	`AG`	`A`	1bp_deletion	frameshift_variant	154	A1,A13,A16,A18,A2,A20,A22,A23,A25,A3,A4,A5,A7,A8,B10,B100,B103,B106,B107,B109,B11,B112,B113,B114,B115,B119,B120,B121,B124,B125,B128,B129,B13,B130,B134,B135,B138,B139,B140,B17,B18,B19,B2,B20,B21,B25,B27,B28,B29,B3,B32,B35,B38,B39,B40,B41,B42,B43,B44,B45,B47,B5,B52,B53,B56,B59,B6,B61,B62,B63,B64,B67,B69,B70,B71,B73,B74,B75,B76,B78,B82,B83,B86,B88,B89,B9,B93,B95,B96,B99,C1,C10,C12,C13,C14,C15,C17,C18,C19,C22,C24,C26,C27,C28,C29,C3,C30,C33,C34,C36,C37,C38,C39,C4,C40,C42,C44,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C7,C70,C71,C72,C74,C76,C78,C79,C8,C80,C84,C86,C87,D11,D3,D4
`Chr4:336453`	`ATG`	`A`	2bp_deletion	frameshift_variant	152	A1,A13,A16,A18,A2,A20,A22,A23,A25,A3,A4,A5,A7,A8,B10,B100,B106,B107,B109,B11,B112,B113,B114,B115,B119,B120,B121,B124,B125,B128,B129,B13,B130,B134,B135,B138,B139,B140,B17,B18,B19,B2,B20,B21,B25,B27,B28,B29,B3,B32,B35,B38,B39,B40,B41,B42,B43,B44,B45,B47,B5,B52,B53,B56,B59,B6,B61,B62,B64,B67,B69,B70,B71,B73,B74,B75,B76,B78,B82,B83,B86,B88,B89,B9,B93,B95,B96,B99,C1,C10,C12,C13,C14,C15,C17,C18,C19,C22,C24,C26,C27,C28,C29,C3,C30,C33,C34,C36,C37,C38,C39,C4,C40,C42,C44,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C7,C70,C71,C72,C74,C76,C78,C79,C8,C80,C84,C86,C87,D11,D3,D4
`Chr4:336457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808377.1

132 aa

132

P16-Arc

PF04699 P16-Arc 14-128 aa

XP_057808378.1

131 aa

131

P16-Arc

PF04699 P16-Arc 14-92 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808377.1`	Pfam	`PF04699`	P16-Arc	Domain	14	128	5.4e-21	76.3	ARP2/3 complex 16 kDa subunit (p16-Arc)
`XP_057808378.1`	Pfam	`PF04699`	P16-Arc	Domain	14	92	6.4e-07	30.6	ARP2/3 complex 16 kDa subunit (p16-Arc)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952394.1
TAACACCCACGCGTTACCTCATCTTCAAAATTTGAAGCAAAATAAAATAAAAATCATTTAATAAAATGGCAGAATTTATGATTTAGCGATTTTCAGCTGGCCAAAAATCAAATCCCTAAAGCAGCACCTGAAGAAATCTTCGGATCAAGAAAATGGCAGAATTTGTGGAAGCAGATGATGCGGAAGCCATAGTCATCCGAATCGAGCAAAAATCCCGCAAGATCGAAAACTTACTCAAACAGTATAAACCAGTGGAAGCT...

XM_057952395.1
TAACACCCACGCGTTACCTCATCTTCAAAATTTGAAGCAAAATAAAATAAAAATCATTTAATAAAATGGCAGAATTTATGATTTAGCGATTTTCAGCTGGCCAAAAATCAAATCCCTAAAGCAGCACCTGAAGAAATCTTCGGATCAAGAAAATGGCAGAATTTGTGGAAGCAGATGATGCGGAAGCCATAGTCATCCGAATCGAGCAAAAATCCCGCAAGATCGAAAACTTACTCAAACAGTATAAACCAGTGGAAGCT...

CDS

2 records

下载 CDS FASTA

LOC131022851
ATGGCAGAATTTGTGGAAGCAGATGATGCGGAAGCCATAGTCATCCGAATCGAGCAAAAATCCCGCAAGATCGAAAACTTACTCAAACAGTATAAACCAGTGGAAGCTCTGAAGACAGCTCTCGAAGGATCGCCACCCGCGATCAAAGACGAGCGTTGCAAGTCTGCGAACTGGATTGTGGTACATAGGGCGATCATGGCGATAAAAGATGTCGATAGTTTGTTCTCGGCTCTCGACCCTGAGTACTACGATGTTTTGAT...

Protein

2 records

下载 Protein FASTA

XP_057808377.1
MAEFVEADDAEAIVIRIEQKSRKIENLLKQYKPVEALKTALEGSPPAIKDERCKSANWIVVHRAIMAIKDVDSLFSALDPEYYDVLMKYIYRGLSTGDRPTCDQCLRIHEKLSERAGLGCILRCLADKVNTV

XP_057808378.1
MAEFVEADDAEAIVIRIEQKSRKIENLLKQYKPVEALKTALEGSPPAIKDERCKSANWIVVHRAIMAIKDVDSLFSALDPEYYDVLMKKVIELVEREKHTQGNQVGTSEAFYSMCYRSFTRKIINKIGRLT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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