当前解析结果
SmilChr04G000042| 统一新 Gene ID | SmilChr04G000042 |
|---|---|
| 名称 | SmilChr04G000042 |
| 描述 | pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 409969 - 412055 / + |
| NCBI Gene ID | LOC131022856 |
|---|---|
| GeneID | 131022856 |
| locus_tag | - |
| NCBI Name | LOC131022856 |
| 原始查询 | SmilChr04G000042 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At2g20710%2C mitochondrial-like |
| Arabidopsis | AT2G20710 (AT2G20710)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816599] identity=38.9; qcov=0.946; evalue=1.94e-95; confidence=medium |
| Rice | Os10g0501300 (PPR10)- identity=35.4; qcov=0.915; evalue=1.45e-78; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022856 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057808385.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057808385.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808385.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808385.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808385.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:410204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B111,B28,C52,D10 |
Chr4:410218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,C8 |
Chr4:410222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C45 |
Chr4:410698 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B52 |
Chr4:410698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:410869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,B9 |
Chr4:411226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr4:411363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr4:411770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808385.1PF01535
PPR 137-165 aa
PF13041
PPR_2 170-213 aa
PF01535
PPR 171-200 aa
PF13812
PPR_3 192-232 aa
PF01535
PPR 205-231 aa
PF01535
PPR 350-372 aa
PF01535
PPR 383-404 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808385.1 |
Pfam | PF01535 |
PPR | Repeat | 137 | 165 | 2.9e-24 | 84.3 | PPR repeat |
XP_057808385.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 170 | 213 | 4.6e-19 | 69.0 | PPR repeat family |
XP_057808385.1 |
Pfam | PF01535 |
PPR | Repeat | 171 | 200 | 2.9e-24 | 84.3 | PPR repeat |
XP_057808385.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 192 | 232 | 1.4e-09 | 38.6 | Pentatricopeptide repeat domain |
XP_057808385.1 |
Pfam | PF01535 |
PPR | Repeat | 205 | 231 | 2.9e-24 | 84.3 | PPR repeat |
XP_057808385.1 |
Pfam | PF01535 |
PPR | Repeat | 350 | 372 | 2.9e-24 | 84.3 | PPR repeat |
XP_057808385.1 |
Pfam | PF01535 |
PPR | Repeat | 383 | 404 | 2.9e-24 | 84.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。