当前解析结果
SmilChr04G000055| 统一新 Gene ID | SmilChr04G000055 |
|---|---|
| 名称 | SmilChr04G000055 |
| 描述 | elongation factor G-2, mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 488585 - 495235 / + |
| NCBI Gene ID | LOC131021089 |
|---|---|
| GeneID | 131021089 |
| locus_tag | - |
| NCBI Name | LOC131021089 |
| 原始查询 | SmilChr04G000055 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation factor G-2, mitochondrial |
| 产物 | elongation factor G-2%2C mitochondrial |
| Arabidopsis | AT2G45030 (AT2G45030)Translation elongation factor EFG/EF2 protein [Source:NCBI gene (formerly Entrezgene);Acc:819110] identity=83.2; qcov=0.996; evalue=0; confidence=high |
| Rice | Os03g0565500 (mEF-G)- identity=83.2; qcov=0.937; evalue=0; confidence=high |
| GO | GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005739 (mitochondrion); GO:0070125 (mitochondrial translational elongation) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF03144 (GTP_EFTU_D2); PF03764 (EFG_IV); PF14492 (EFG_III); PF22042 (EF-G_D2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021089 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057806163.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.80000 | XP_057806163.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806163.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806163.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806163.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:488694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,D7 |
Chr4:488781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B54 |
Chr4:488808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C21,C58 |
Chr4:488977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr4:490427 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B87 |
Chr4:490427 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B87 |
Chr4:490458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
Chr4:490533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B131,C64 |
Chr4:493135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:494143 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B86 |
Chr4:494143 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B86 |
Chr4:494801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806163.1PF00009
GTP_EFTU 67-340 aa
PF22042
EF-G_D2 381-449 aa
PF03144
GTP_EFTU_D2 382-448 aa
PF14492
EFG_III 461-535 aa
PF03764
EFG_IV 536-656 aa
PF00679
EFG_C 660-745 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806163.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 67 | 340 | 7.4e-61 | 205.7 | Elongation factor Tu GTP binding domain |
XP_057806163.1 |
Pfam | PF22042 |
EF-G_D2 | Domain | 381 | 449 | 1.8e-10 | 41.5 | Elongation factor G domain 2 |
XP_057806163.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 382 | 448 | 9.5e-15 | 55.5 | Elongation factor Tu domain 2 |
XP_057806163.1 |
Pfam | PF14492 |
EFG_III | Domain | 461 | 535 | 1.2e-28 | 99.7 | Elongation Factor G, domain III |
XP_057806163.1 |
Pfam | PF03764 |
EFG_IV | Domain | 536 | 656 | 1.6e-38 | 131.9 | Elongation factor G, domain IV |
XP_057806163.1 |
Pfam | PF00679 |
EFG_C | Domain | 660 | 745 | 2.5e-25 | 89.1 | Elongation factor G C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。