当前解析结果
SmilChr04G000067| 统一新 Gene ID | SmilChr04G000067 |
|---|---|
| 名称 | SmilChr04G000067 |
| 描述 | uncharacterized SmilChr04G000067 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 600604 - 619869 / + |
| NCBI Gene ID | LOC131021995 |
|---|---|
| GeneID | 131021995 |
| locus_tag | - |
| NCBI Name | LOC131021995 |
| 原始查询 | SmilChr04G000067 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription regulator [Source:NCBI gene (formerly Entrezgene);Acc:839244]; symbol=AT1G02080; hit=AT1G02080; species=arabidopsis; confidence=high |
| 产物 | transcription regulator [Source:NCBI gene (formerly Entrezgene);Acc:839244]; symbol=AT1G02080; hit=AT1G02080; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G02080 (AT1G02080)transcription regulator [Source:NCBI gene (formerly Entrezgene);Acc:839244] identity=58.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os10g0556700 (OsNOT1)- identity=54.3; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0000288 (nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay); GO:0000932 (P-body); GO:0030015 (CCR4-NOT core complex); GO:0060090 (molecular adaptor activity) |
| KEGG | smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04054 (Not1); PF12842 (DUF3819); PF16415 (CNOT1_CAF1_bind); PF16417 (CNOT1_TTP_bind); PF16418 (CNOT1_HEAT); PF23590 (NOT1_connector); PF25097 (ARM_Cnot1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021995 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057807320.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057807320.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057807320.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.60000 | XP_057807320.1 |
| 5 | P-body | P-body | 0.40000 | XP_057807320.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:603044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B130,B89 |
Chr4:603109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B70,C41 |
Chr4:603484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B121,B122,C65 |
Chr4:603708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:603740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:603867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr4:604559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:604858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B8 |
Chr4:608318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B104,C15,C26,D3 |
Chr4:609826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr4:610370 |
TAG |
T |
2bp_deletion | frameshift_variant | 1 | C80 |
Chr4:610370 |
TAG |
T |
2bp_deletion | CDS_variant | 1 | C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807320.1PF16418
CNOT1_HEAT 474-620 aa
PF16417
CNOT1_TTP_bind 658-818 aa
PF16415
CNOT1_CAF1_bind 964-1183 aa
PF12842
DUF3819 1308-1450 aa
PF23590
NOT1_connector 1650-1828 aa
PF25097
ARM_Cnot1 1655-1830 aa
PF04054
Not1 2036-2396 aa
XP_057807321.1PF16418
CNOT1_HEAT 474-620 aa
PF16417
CNOT1_TTP_bind 658-818 aa
PF16415
CNOT1_CAF1_bind 964-1183 aa
PF12842
DUF3819 1308-1449 aa
PF23590
NOT1_connector 1649-1827 aa
PF25097
ARM_Cnot1 1654-1829 aa
PF04054
Not1 2035-2395 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807320.1 |
Pfam | PF16418 |
CNOT1_HEAT | Repeat | 474 | 620 | 7e-33 | 114.6 | CCR4-NOT transcription complex subunit 1 HEAT repeat |
XP_057807320.1 |
Pfam | PF16417 |
CNOT1_TTP_bind | Repeat | 658 | 818 | 4.7e-68 | 228.8 | CCR4-NOT transcription complex subunit 1 TTP binding domain |
XP_057807320.1 |
Pfam | PF16415 |
CNOT1_CAF1_bind | Repeat | 964 | 1183 | 1.4e-88 | 296.8 | CCR4-NOT transcription complex subunit 1 CAF1-binding domain |
XP_057807320.1 |
Pfam | PF12842 |
DUF3819 | Domain | 1308 | 1450 | 3.9e-48 | 163.9 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
XP_057807320.1 |
Pfam | PF23590 |
NOT1_connector | Repeat | 1650 | 1828 | 9.7e-22 | 78.2 | CCR4-NOT transcription complex subunit 1, NOT1_connector |
XP_057807320.1 |
Pfam | PF25097 |
ARM_Cnot1 | Repeat | 1655 | 1830 | 6.7e-57 | 193.1 | Cnot1 ARM repeat |
XP_057807320.1 |
Pfam | PF04054 |
Not1 | Repeat | 2036 | 2396 | 2.8e-144 | 481.4 | CCR4-Not complex component, Not1 |
XP_057807321.1 |
Pfam | PF16418 |
CNOT1_HEAT | Repeat | 474 | 620 | 7e-33 | 114.6 | CCR4-NOT transcription complex subunit 1 HEAT repeat |
XP_057807321.1 |
Pfam | PF16417 |
CNOT1_TTP_bind | Repeat | 658 | 818 | 4.7e-68 | 228.8 | CCR4-NOT transcription complex subunit 1 TTP binding domain |
XP_057807321.1 |
Pfam | PF16415 |
CNOT1_CAF1_bind | Repeat | 964 | 1183 | 1.4e-88 | 296.8 | CCR4-NOT transcription complex subunit 1 CAF1-binding domain |
XP_057807321.1 |
Pfam | PF12842 |
DUF3819 | Domain | 1308 | 1449 | 1.5e-50 | 171.7 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
XP_057807321.1 |
Pfam | PF23590 |
NOT1_connector | Repeat | 1649 | 1827 | 9.7e-22 | 78.2 | CCR4-NOT transcription complex subunit 1, NOT1_connector |
XP_057807321.1 |
Pfam | PF25097 |
ARM_Cnot1 | Repeat | 1654 | 1829 | 6.6e-57 | 193.1 | Cnot1 ARM repeat |
XP_057807321.1 |
Pfam | PF04054 |
Not1 | Repeat | 2035 | 2395 | 2.7e-144 | 481.4 | CCR4-Not complex component, Not1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。