Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000082`

染色体: Chr04 坐标: 728768-731301 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000082`
名称	SmilChr04G000082
描述	spindle and kinetochore-associated protein 1 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	728768 - 731301 / `-`

ID 对照

NCBI Gene ID	`LOC131022007`
GeneID	`131022007`
locus_tag	`-`
NCBI Name	`LOC131022007`
原始查询	`SmilChr04G000082`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	spindle and kinetochore-associated protein 1 homolog
产物	spindle and kinetochore-associated protein 1 homolog
Arabidopsis	`AT3G60660` (AT3G60660) spindle/kinetochore-associated-like protein [Source:NCBI gene (formerly Entrezgene);Acc:825237] identity=64.2; qcov=1.02; evalue=2.67e-121; confidence=high
Rice	`Os07g0484500` - identity=50.2; qcov=1.02; evalue=3.2e-90; confidence=high
GO	GO:0000278 (mitotic cell cycle); GO:0000940 (outer kinetochore); GO:0005876 (spindle microtubule); GO:0007059 (chromosome segregation); GO:0008017 (microtubule binding); GO:0031110 (regulation of microtubule polymerization or depolymerization); GO:0051301 (cell division); GO:0072686 (mitotic spindle)
KEGG	-
Pfam	PF07160 (SKA1)
InterPro	-
eggNOG	-
NR	GeneID:131022007

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807333.1`
2	Chromosome	染色体	1.00000	`XP_057807333.1`
3	Nucleoplasm	核质	0.80000	`XP_057807333.1`
4	Centromere	着丝粒	0.20000	`XP_057807333.1`
5	Chromatin	染色质	0.00000	`XP_057807333.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:729028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:729333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr4:729700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:730108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr4:730884`	`G`	`GTT`	2bp_insertion	frameshift_variant	1	B97
`Chr4:730884`	`G`	`GTT`	2bp_insertion	CDS_variant	1	B97
`Chr4:730986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr4:731144`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807333.1

266 aa

133

266

SKA1

PF07160 SKA1 9-257 aa

XP_057807335.1

265 aa

132

265

SKA1

PF07160 SKA1 9-256 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807333.1`	Pfam	`PF07160`	SKA1	Family	9	257	7.3e-79	265.7	Spindle and kinetochore-associated protein 1
`XP_057807335.1`	Pfam	`PF07160`	SKA1	Family	9	256	1.9e-78	264.4	Spindle and kinetochore-associated protein 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951352.1
TGATTTGTCATTCAAAAACATCCCTTTTGTGTTAAAAAAGGAAAAGAAGTGAAAGCGAAGAGCGGTTTCGTTTTCGATTCAAATATACACAGAGCTTCAAAGTTCTCTCTCAATCAGAGCTTCAAGGATGGATGTGAAAGAAGCCGGAGCGTCTCTCGATGCGCTGATTTCCTCTTTCAATTCCCGAATAGCGGAGCTGCAGCAGCTAGTCATTGCTCGAAACATGTATCCGGCTGGCAGCGTCGCCGATTTATCGGCGA...

XM_057951350.1
TGATTTGTCATTCAAAAACATCCCTTTTGTGTTAAAAAAGGAAAAGAAGTGAAAGCGAAGAGCGGTTTCGTTTTCGATTCAAATATACACAGAGCTTCAAAGTTCTCTCTCAATCAGAGCTTCAAGGATGGATGTGAAAGAAGCCGGAGCGTCTCTCGATGCGCTGATTTCCTCTTTCAATTCCCGAATAGCGGAGCTGCAGCAGCTAGTCATTGCTCGAAACATGTATCCGGCTGGCAGCGTCGCCGATTTATCGGCGA...

CDS

2 records

下载 CDS FASTA

LOC131022007
ATGGATGTGAAAGAAGCCGGAGCGTCTCTCGATGCGCTGATTTCCTCTTTCAATTCCCGAATAGCGGAGCTGCAGCAGCTAGTCATTGCTCGAAACATGTATCCGGCTGGCAGCGTCGCCGATTTATCGGCGATAGATTCCGCGTTGAAGGCCATGGAGCTCCAGGTTCTAAATATCAAGAATCGCTTACGCGATGAGACTCGAGCTATCCCTAAAGCCAAAAAGTTAATAGAGGCAGCACTGCAGCAACAGAAGAAATT...

Protein

2 records

下载 Protein FASTA

XP_057807333.1
MDVKEAGASLDALISSFNSRIAELQQLVIARNMYPAGSVADLSAIDSALKAMELQVLNIKNRLRDETRAIPKAKKLIEAALQQQKKLESISACVSSCVPERITNLNQDNNKWAQQEEFGQDLRFESLKLEEPAPKQEKKGRASPPMWYITAEELNSVPPYMKQRLTLDKMNAAIGDMANYAEANAHLISAPRKKLSDHNLDKALKLREISMADSVKGKHFFLESDIKGPSLKLDNTGRALLTVLRHLGRISETRIGHDRV...

XP_057807335.1
MDVKEAGASLDALISSFNSRIAELQQLVIARNMYPAGSVADLSAIDSALKAMELQVLNIKNRLRDETRAIPKAKKLIEAALQQQKKLESISACVSSCVPERITNLNQDNNKWAQQEEFGQDLRFESLKLEEPAPKEKKGRASPPMWYITAEELNSVPPYMKQRLTLDKMNAAIGDMANYAEANAHLISAPRKKLSDHNLDKALKLREISMADSVKGKHFFLESDIKGPSLKLDNTGRALLTVLRHLGRISETRIGHDRVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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