当前解析结果
SmilChr04G000084| 统一新 Gene ID | SmilChr04G000084 |
|---|---|
| 名称 | SmilChr04G000084 |
| 描述 | VIN3-like protein 1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 735192 - 739180 / - |
| NCBI Gene ID | LOC131022011 |
|---|---|
| GeneID | 131022011 |
| locus_tag | - |
| NCBI Name | LOC131022011 |
| 原始查询 | SmilChr04G000084 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | VIN3-like protein 1 |
| 产物 | VIN3-like protein 1 |
| Arabidopsis | AT3G24440 (VRN5)Fibronectin type III domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:822034] identity=47.9; qcov=0.938; evalue=4.88e-172; confidence=high |
| Rice | Os12g0533500 (OsVIL1)- identity=52.9; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0010048 (vernalization response); GO:0040029 (epigenetic regulation of gene expression) |
| KEGG | - |
| Pfam | PF07227 (PHD_Oberon); PF23376 (Fn3_VIN3); PF23380 (VIN3_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022011 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807341.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057807341.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807341.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807341.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807341.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:735714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B21,C19,C31,D11 |
Chr4:735788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B69 |
Chr4:735978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr4:736116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,C16,C2,C62 |
Chr4:736185 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | C56,D6 |
Chr4:736185 |
A |
AC |
1bp_insertion | CDS_variant | 2 | C56,D6 |
Chr4:736852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B69,B71,C79 |
Chr4:736869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:736900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:736941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr4:737003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B123,C24,C50,C9 |
Chr4:737044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807341.1PF07227
PHD_Oberon 62-180 aa
PF23376
Fn3_VIN3 268-355 aa
PF23380
VIN3_C 547-616 aa
XP_057807342.1PF07227
PHD_Oberon 62-180 aa
PF23376
Fn3_VIN3 268-355 aa
PF23380
VIN3_C 547-616 aa
XP_057807344.1PF07227
PHD_Oberon 62-180 aa
PF23376
Fn3_VIN3 268-355 aa
PF23380
VIN3_C 547-616 aa
XP_057807345.1PF07227
PHD_Oberon 62-180 aa
PF23376
Fn3_VIN3 268-355 aa
PF23380
VIN3_C 547-616 aa
XP_057807346.1PF07227
PHD_Oberon 62-180 aa
PF23376
Fn3_VIN3 268-355 aa
PF23380
VIN3_C 547-616 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807341.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 62 | 180 | 1.3e-32 | 113.1 | PHD - plant homeodomain finger protein |
XP_057807341.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 268 | 355 | 8.2e-28 | 97.1 | VIN3-like, fibronectin type-III domain |
XP_057807341.1 |
Pfam | PF23380 |
VIN3_C | Domain | 547 | 616 | 3.8e-39 | 133.0 | VIN3-like, C-terminal domain |
XP_057807342.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 62 | 180 | 1.3e-32 | 113.1 | PHD - plant homeodomain finger protein |
XP_057807342.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 268 | 355 | 8.2e-28 | 97.1 | VIN3-like, fibronectin type-III domain |
XP_057807342.1 |
Pfam | PF23380 |
VIN3_C | Domain | 547 | 616 | 3.8e-39 | 133.0 | VIN3-like, C-terminal domain |
XP_057807344.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 62 | 180 | 1.3e-32 | 113.1 | PHD - plant homeodomain finger protein |
XP_057807344.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 268 | 355 | 8.2e-28 | 97.1 | VIN3-like, fibronectin type-III domain |
XP_057807344.1 |
Pfam | PF23380 |
VIN3_C | Domain | 547 | 616 | 3.8e-39 | 133.0 | VIN3-like, C-terminal domain |
XP_057807345.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 62 | 180 | 1.3e-32 | 113.2 | PHD - plant homeodomain finger protein |
XP_057807345.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 268 | 355 | 8.1e-28 | 97.1 | VIN3-like, fibronectin type-III domain |
XP_057807345.1 |
Pfam | PF23380 |
VIN3_C | Domain | 547 | 616 | 3.8e-39 | 133.0 | VIN3-like, C-terminal domain |
XP_057807346.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 62 | 180 | 1.3e-32 | 113.2 | PHD - plant homeodomain finger protein |
XP_057807346.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 268 | 355 | 8.1e-28 | 97.1 | VIN3-like, fibronectin type-III domain |
XP_057807346.1 |
Pfam | PF23380 |
VIN3_C | Domain | 547 | 616 | 3.8e-39 | 133.0 | VIN3-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。