Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000085`

染色体: Chr04 坐标: 740488-744654 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000085`
名称	SmilChr04G000085
描述	VIN3-like protein 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	740488 - 744654 / `-`

ID 对照

NCBI Gene ID	`LOC131022012`
GeneID	`131022012`
locus_tag	`-`
NCBI Name	`LOC131022012`
原始查询	`SmilChr04G000085`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	VIN3-like protein 1
产物	VIN3-like protein 1
Arabidopsis	`AT3G24440` (VRN5) Fibronectin type III domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:822034] identity=49.1; qcov=0.93; evalue=9.28e-176; confidence=high
Rice	`Os12g0533500` (OsVIL1) - identity=53.5; qcov=0.971; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0010048 (vernalization response); GO:0040029 (epigenetic regulation of gene expression)
KEGG	-
Pfam	PF07227 (PHD_Oberon); PF23376 (Fn3_VIN3); PF23380 (VIN3_C)
InterPro	-
eggNOG	-
NR	GeneID:131022012

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807347.1`
2	Chromosome	染色体	0.00000	`XP_057807347.1`
3	Centromere	着丝粒	0.00000	`XP_057807347.1`
4	Chromatin	染色质	0.00000	`XP_057807347.1`
5	Telomere	端粒	0.00000	`XP_057807347.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:741010`	`CA`	`C`	1bp_deletion	frameshift_variant	12	A25,B134,B28,B45,B56,B69,B71,B96,C29,C40,C79,D1
`Chr4:741548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A25,B45,D1
`Chr4:741780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:742011`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:742395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr4:742834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,C5
`Chr4:742886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr4:743067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807347.1

630 aa

315

630

PHD_Oberon

Fn3_VIN3

VIN3_C

PF07227 PHD_Oberon 62-180 aa PF23376 Fn3_VIN3 268-355 aa PF23380 VIN3_C 547-616 aa

XP_057807348.1

630 aa

315

630

PHD_Oberon

Fn3_VIN3

VIN3_C

PF07227 PHD_Oberon 62-180 aa PF23376 Fn3_VIN3 268-355 aa PF23380 VIN3_C 547-616 aa

XP_057807349.1

629 aa

314

629

PHD_Oberon

Fn3_VIN3

VIN3_C

PF07227 PHD_Oberon 62-180 aa PF23376 Fn3_VIN3 268-355 aa PF23380 VIN3_C 547-616 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807347.1`	Pfam	`PF07227`	PHD_Oberon	Family	62	180	1.3e-32	113.1	PHD - plant homeodomain finger protein
`XP_057807347.1`	Pfam	`PF23376`	Fn3_VIN3	Domain	268	355	8e-28	97.1	VIN3-like, fibronectin type-III domain
`XP_057807347.1`	Pfam	`PF23380`	VIN3_C	Domain	547	616	3.9e-39	133.0	VIN3-like, C-terminal domain
`XP_057807348.1`	Pfam	`PF07227`	PHD_Oberon	Family	62	180	1.3e-32	113.1	PHD - plant homeodomain finger protein
`XP_057807348.1`	Pfam	`PF23376`	Fn3_VIN3	Domain	268	355	8e-28	97.1	VIN3-like, fibronectin type-III domain
`XP_057807348.1`	Pfam	`PF23380`	VIN3_C	Domain	547	616	3.9e-39	133.0	VIN3-like, C-terminal domain
`XP_057807349.1`	Pfam	`PF07227`	PHD_Oberon	Family	62	180	1.3e-32	113.1	PHD - plant homeodomain finger protein
`XP_057807349.1`	Pfam	`PF23376`	Fn3_VIN3	Domain	268	355	8.1e-28	97.1	VIN3-like, fibronectin type-III domain
`XP_057807349.1`	Pfam	`PF23380`	VIN3_C	Domain	547	616	3.9e-39	133.0	VIN3-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951366.1
GCCTGTGTGCCCATCTGTTATCTTTCACGCAATTTCGCATAAATACAGACGCTGATAAATTCCTCCAAAAAAATTGAGCCTTTTGCGAGCCTCGAATCGAACAGGGCCGTCGAATCTCACCATTATTTTTGAGGGATTTTGGCGTCACAGCATTTTTAGGCGAGATCCCCTCGCCCAATTATGAGTTAATTCTTGCTGAAGTGACGCAAGTTGCTGACAATTTACACTTTGAACATGCTTCAAGATTCGAGGAAAGACTT...

XM_057951364.1
GTGTGCCCATCTGTTATCTTTCACGCAATTTCGCATAAATACAGACGCTGATAAATTCCTCCAAAAAAATTGAGCCTTTTGCGAGCCTCGAATCGAACAGGGCCGTCGAATCTCACCATTATTTTTGAGGGATTTTGGCGTCACAGCATTTTTAGGCGAGATCCCCTCGCCCAATTATGAGTTAATTCTTGCTGAAGTGACGCAAGTTGCTGACAATTTACACTTTGAACATGCTTCAAGATTCGAGGAAAGACTTGAGG...

CDS

3 records

下载 CDS FASTA

LOC131022012
ATGGCCGAACCACTAATGAAAGCTTGTAGAAAAGCATCAAAGACATGTGAATTCAAGAGAACATCTTCAAGTCCCAAGGATCAAATTCAGCAATCTAAAAGGCCTAGGAAGGGTGAAAACCCTGTTCGAATTGCACCGAGTCCTGACCAGTGTACTGATTTCAAATCTTCTAATTCGTGGACCTGCAAAAATTCTGCATGTCGAGCCACTCTTTCCATAGATGACACATTTTGTAGGAGGTGTTCTTGTTGCATTTGCCA...

Protein

3 records

下载 Protein FASTA

XP_057807347.1
MAEPLMKACRKASKTCEFKRTSSSPKDQIQQSKRPRKGENPVRIAPSPDQCTDFKSSNSWTCKNSACRATLSIDDTFCRRCSCCICHLFDDNKDPSLWLECVSDLGLGDSCGLSCHIECALQRGKVGVVDLGPLMQLDGSYCCASCGKVSGILGCWKKQLSIAKDARRVDILCYRIFLSFRLLDGTSRFNELHEIVRDAKSKLETEVGPVNGVSAKMARGIVSRLSAAAEVQRLCSLAVEKADILMASKSTAAINFVEGS...

XP_057807348.1
MAEPLMKACRKASKTCEFKRTSSSPKDQIQQSKRPRKGENPVRIAPSPDQCTDFKSSNSWTCKNSACRATLSIDDTFCRRCSCCICHLFDDNKDPSLWLECVSDLGLGDSCGLSCHIECALQRGKVGVVDLGPLMQLDGSYCCASCGKVSGILGCWKKQLSIAKDARRVDILCYRIFLSFRLLDGTSRFNELHEIVRDAKSKLETEVGPVNGVSAKMARGIVSRLSAAAEVQRLCSLAVEKADILMASKSTAAINFVEGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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