Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000086`

染色体: Chr04 坐标: 762400-766959 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000086`
名称	SmilChr04G000086
描述	scarecrow-like protein 6
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	762400 - 766959 / `+`

ID 对照

NCBI Gene ID	`LOC131022013`
GeneID	`131022013`
locus_tag	`-`
NCBI Name	`LOC131022013`
原始查询	`SmilChr04G000086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	scarecrow-like protein 6
产物	scarecrow-like protein 6
Arabidopsis	`AT4G00150` (HAM3) GRAS family transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:828208] identity=48.8; qcov=0.813; evalue=3.55e-158; confidence=high
Rice	`Os02g0663100` (OsHAM2) - identity=37.8; qcov=1.11; evalue=6.75e-116; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03514 (GRAS)
InterPro	-
eggNOG	-
NR	GeneID:131022013

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807350.1`
2	Chromosome	染色体	0.00000	`XP_057807350.1`
3	Centromere	着丝粒	0.00000	`XP_057807350.1`
4	Chromatin	染色质	0.00000	`XP_057807350.1`
5	Telomere	端粒	0.00000	`XP_057807350.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:762852`	`G`	`GA`	1bp_insertion	frameshift_variant	2	B98,C50
`Chr4:762852`	`G`	`GA`	1bp_insertion	CDS_variant	2	B98,C50
`Chr4:762857`	`G`	`GAT`	2bp_insertion	frameshift_variant	2	B98,C50
`Chr4:762857`	`G`	`GAT`	2bp_insertion	CDS_variant	2	B98,C50
`Chr4:762874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C17,C50,C79
`Chr4:763008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B85,C70,D2
`Chr4:763039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B51
`Chr4:763167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:763221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr4:763245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B51,B75
`Chr4:763329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr4:763456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B124,C16,C2,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807350.1

707 aa

354

707

GRAS

PF03514 GRAS 344-706 aa

XP_057807351.1

707 aa

354

707

GRAS

PF03514 GRAS 344-706 aa

XP_057807352.1

668 aa

334

668

GRAS

PF03514 GRAS 305-667 aa

XP_057807354.1

668 aa

334

668

GRAS

PF03514 GRAS 305-667 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807350.1`	Pfam	`PF03514`	GRAS	Family	344	706	9.4e-99	331.5	GRAS domain family
`XP_057807351.1`	Pfam	`PF03514`	GRAS	Family	344	706	9.4e-99	331.5	GRAS domain family
`XP_057807352.1`	Pfam	`PF03514`	GRAS	Family	305	667	8.2e-99	331.8	GRAS domain family
`XP_057807354.1`	Pfam	`PF03514`	GRAS	Family	305	667	8.2e-99	331.8	GRAS domain family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057951369.1
GAAGAAACAAAAAAAGAAAAGAAAAAAAAAAGAAAAAAAAAAGGAAGAAAACAATAGAGTAGAGGAGAGAGAGAGAGAGAGGAGGAGGATGAATGAAGGAGGAGGGAGGGGGGCACTTTACTACTACTTTTTTATGTTGCACGCATCAATGGCAGAAAACAGAAGGCAGACAGAGTACTACTCCTTCATCGACCAGACCACAGAAAATTAAACACAAGAGCAATTCCCCCAACCCTCCATTTTGCAAACCCCACCATTTT...

XM_057951367.1
AAAAGAAAAAAAAAAGAAAAAAAAAAGGAAGAAAACAATAGAGTAGAGGAGAGAGAGAGAGAGAGGAGGAGGATGAATGAAGGAGGAGGGAGGGGGGCACTTTACTACTACTTTTTTATGTTGCACGCATCAATGGCAGAAAACAGAAGGCAGACAGAGTACTACTCCTTCATCGACCAGACCACAGAAAATTAAACACAAGAGCAATTCCCCCAACCCTCCATTTTGCAAACCCCACCATTTTCTTCACTTCACCTTTC...

CDS

4 records

下载 CDS FASTA

LOC131022013
ATGAAGGGGATGCCCTTACCCTTTGAATTTGAGGGGAAGGGGGTGTTAGACTTAGATTTCGTAGTGAAGAACAGAGATTTCATCACAGATTTCGTGAAGAAGGGTTGTTTCCTGAGCAGCAGCTTCGGCGAGCCGACATCTGTGCTGGATTCTGCAAGGATTCCGAGCAGGCCCACATCCTCCTCAACACTGTCTTCATCTCTCGGCGGGAGCACCGGCGGGGGTGGTGCTGCTTCTACCGACACGGCCGGCGTGGCGGC...

Protein

4 records

下载 Protein FASTA

XP_057807350.1
MKGMPLPFEFEGKGVLDLDFVVKNRDFITDFVKKGCFLSSSFGEPTSVLDSARIPSRPTSSSTLSSSLGGSTGGGGAASTDTAGVAAVSDTNPSPKWQQDSTTATSSNAGGGADLLPVLPSLDGGGGNPEKFAMEDWESVLSESAAVSPSQEQAFIRWVMGDVEDPAMANLNKTLQIGSAAEFDFSGGFGVVDQGFGGDQFGGSFMPTLPNFSRSSAEKIGLPLPPSSANFKFPPNSMHPSNNLGPIALHHPTAFDSSAE...

XP_057807351.1
MKGMPLPFEFEGKGVLDLDFVVKNRDFITDFVKKGCFLSSSFGEPTSVLDSARIPSRPTSSSTLSSSLGGSTGGGGAASTDTAGVAAVSDTNPSPKWQQDSTTATSSNAGGGADLLPVLPSLDGGGGNPEKFAMEDWESVLSESAAVSPSQEQAFIRWVMGDVEDPAMANLNKTLQIGSAAEFDFSGGFGVVDQGFGGDQFGGSFMPTLPNFSRSSAEKIGLPLPPSSANFKFPPNSMHPSNNLGPIALHHPTAFDSSAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器