Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000105`

染色体: Chr04 坐标: 932531-938147 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000105`
名称	SmilChr04G000105
描述	probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	932531 - 938147 / `+`

ID 对照

NCBI Gene ID	`LOC131022033`
GeneID	`131022033`
locus_tag	`-`
NCBI Name	`LOC131022033`
原始查询	`SmilChr04G000105`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial
产物	probable tRNA N6-adenosine threonylcarbamoyltransferase%2C mitochondrial
Arabidopsis	`AT2G45270` (GCP1) glycoprotease 1 [Source:NCBI gene (formerly Entrezgene);Acc:819135] identity=76.8; qcov=0.818; evalue=0; confidence=high
Rice	`Os12g0485000` (GCP1) - identity=70.6; qcov=0.827; evalue=3.59e-178; confidence=high
GO	GO:0002949 (tRNA threonylcarbamoyladenosine modification); GO:0005739 (mitochondrion)
KEGG	-
Pfam	PF00814 (TsaD)
InterPro	-
eggNOG	-
NR	GeneID:131022033

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057807377.1`
2	Cytosol	细胞质基质	1.00000	`XP_057807381.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057807379.1`
4	Cytoplasm	细胞质	0.20000	`XP_057807381.1`
5	Mitochondrion	线粒体	0.20000	`XP_057807378.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:932747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,B140
`Chr4:932814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,B140
`Chr4:935163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr4:935486`	`ACG`	`A`	2bp_deletion	frameshift_variant	49	A11,A16,A18,A9,B113,B124,B125,B129,B131,B140,B16,B19,B25,B26,B29,B4,B42,B43,B44,B48,B6,B62,B78,B84,B88,B89,B94,C12,C16,C2,C23,C24,C38,C39,C42,C59,C62,C63,C67,C73,C76,C77,C80,C82,C85,C87,D1,D10,D5
`Chr4:935531`	`G`	`GCT`	2bp_insertion	frameshift_variant	9	A3,B111,B115,B130,B48,B76,B98,C16,D8
`Chr4:935563`	`T`	`TTA`	2bp_insertion	frameshift_variant	87	A1,A14,A19,A2,A20,A21,A22,A23,A25,A4,B1,B10,B100,B102,B103,B105,B106,B111,B119,B121,B126,B132,B133,B136,B139,B21,B28,B29,B30,B34,B47,B49,B5,B51,B52,B54,B55,B59,B66,B67,B70,B71,B73,B74,B76,B77,B83,B87,B9,B93,B95,B97,B99,C1,C11,C24,C25,C27,C28,C3,C34,C42,C43,C44,C45,C50,C51,C53,C54,C57,C6,C60,C64,C65,C69,C7,C71,C72,C74,C78,C8,C80,C84,D5,D6,D8,D9
`Chr4:935565`	`T`	`TTA`	2bp_insertion	stop_gained,frameshift_variant	29	A15,A23,A5,B118,B12,B16,B23,B33,B36,B41,B59,B60,B72,B75,B82,B86,B98,C14,C17,C19,C31,C4,C63,C64,C66,C83,C86,C9,D11
`Chr4:935567`	`T`	`TTA`	2bp_insertion	frameshift_variant	84	A1,A14,A19,A2,A20,A21,A22,A25,A4,B1,B10,B100,B102,B103,B105,B106,B111,B119,B121,B126,B132,B133,B136,B139,B21,B28,B29,B30,B34,B47,B49,B5,B51,B52,B54,B55,B66,B67,B70,B71,B73,B74,B76,B77,B83,B87,B9,B93,B95,B97,B99,C1,C11,C24,C25,C27,C28,C3,C34,C42,C43,C44,C45,C50,C51,C53,C54,C57,C6,C60,C65,C69,C7,C71,C72,C74,C78,C8,C80,C84,D5,D6,D8,D9
`Chr4:935576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:935593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr4:935954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B138,B37,B9,C15
`Chr4:936324`	`C`	`T`	EMS_canonical_SNV	stop_gained	162	A10,A11,A16,A18,A19,A2,A21,A23,A24,A3,A7,A8,A9,B101,B104,B105,B109,B11,B110,B111,B112,B113,B114,B115,B117,B119,B12,B122,B123,B124,B125,B126,B129,B13,B130,B131,B133,B134,B135,B137,B138,B139,B14,B140,B16,B17,B19,B23,B25,B26,B27,B29,B3,B30,B32,B34,B35,B37,B38,B39,B4,B40,B42,B43,B44,B46,B48,B50,B53,B56,B57,B59,B6,B60,B61,B62,B63,B65,B67,B68,B70,B72,B73,B76,B78,B80,B81,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,C1,C10,C12,C13,C14,C15,C16,C17,C19,C2,C20,C22,C23,C24,C26,C27,C28,C30,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C49,C52,C53,C55,C58,C59,C60,C62,C63,C67,C70,C72,C73,C74,C76,C77,C79,C8,C80,C82,C85,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807377.1

526 aa

263

526

TsaD

PF00814 TsaD 186-459 aa

XP_057807378.1

522 aa

261

522

TsaD

PF00814 TsaD 186-455 aa

XP_057807379.1

467 aa

234

467

TsaD

PF00814 TsaD 93-400 aa

XP_057807380.1

463 aa

232

463

TsaD

PF00814 TsaD 93-396 aa

XP_057807381.1

411 aa

206

411

TsaD

PF00814 TsaD 71-344 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807377.1`	Pfam	`PF00814`	TsaD	Family	186	459	6.6e-71	239.8	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057807378.1`	Pfam	`PF00814`	TsaD	Family	186	455	1.8e-78	264.6	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057807379.1`	Pfam	`PF00814`	TsaD	Family	93	400	1.4e-76	258.4	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057807380.1`	Pfam	`PF00814`	TsaD	Family	93	396	3.5e-84	283.3	tRNA N6-adenosine threonylcarbamoyltransferase
`XP_057807381.1`	Pfam	`PF00814`	TsaD	Family	71	344	3e-65	221.3	tRNA N6-adenosine threonylcarbamoyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057951397.1
CTTTAATCTTTTTATAATTGCTAATCACACCCCACACACCAAAACTAAAAATTTGCACTTTCAATTTCACCCCAATTCTGCACTAAAATATTAAATTTACATCATCTCTCGCGATTAAAAAATCCCGTGGCTCTTTCGAACTCACTCTGCATCTCACATGGCGTCCTTGACGTCCAATTTAACCTCCATAACTTCCCGCCTAACCCTTCTCCGCAAGCCCTCAATCCACTATTCCACCACAACTCTCCAAAAATTGCAAT...

XM_057951394.1
AATTCTGCACTAAAATATTAAATTTACATCATCTCTCGCGATTAAAAAATCCCGTGGCTCTTTCGAACTCACTCTGCATCTCACATGGCGTCCTTGACGTCCAATTTAACCTCCATAACTTCCCGCCTAACCCTTCTCCGCAAGCCCTCAATCCACTATTCCACCACAACTCTCCAAAAATTGCAATTTCGCCTCAAATTGAGCAGACCCGCAGCTCCCTTTCCCCATCACACAATCCATTATTCATCTTGCCCGAAGGC...

CDS

5 records

下载 CDS FASTA

LOC131022033
ATGGCGTCCTTGACGTCCAATTTAACCTCCATAACTTCCCGCCTAACCCTTCTCCGCAAGCCCTCAATCCACTATTCCACCACAACTCTCCAAAAATTGCAATTTCGCCTCAAATTGAGCAGACCCGCAGCTCCCTTTCCCCATCACACAATCCATTATTCATCTTGCCCGAAGGCGCGAACCGTAAAAGCGTCAAGCCAAGATGAGGAATTGGTTGTTCTTGGTATTGAAACTAGCTGCGACGACACTGCGGCTGCAGT...

Protein

5 records

下载 Protein FASTA

XP_057807377.1
MASLTSNLTSITSRLTLLRKPSIHYSTTTLQKLQFRLKLSRPAAPFPHHTIHYSSCPKARTVKASSQDEELVVLGIETSCDDTAAAVVRSNGEILSQVVSSQADLLVRYGGVAPKMAEEAHSLVIDQVKVRSDHSHMNDLYTSSTHAVDISRGRLFSFYPCCVYVCVCVCVCVLYTLYIFGALSSQVVQEALDKAKLTEEDLSAVAVTIGPGLSLCLRVGVRKARKLAGAYTLPIIGVHHMEAHALVASAKRVTVPFHGL...

XP_057807378.1
MASLTSNLTSITSRLTLLRKPSIHYSTTTLQKLQFRLKLSRPAAPFPHHTIHYSSCPKARTVKASSQDEELVVLGIETSCDDTAAAVVRSNGEILSQVVSSQADLLVRYGGVAPKMAEEAHSLVIDQVKVRSDHSHMNDLYTSSTHAVDISRGRLFSFYPCCVYVCVCVCVCVLYTLYIFGALSSQVVQEALDKAKLTEEDLSAVAVTIGPGLSLCLRVGVRKARKLAGAYTLPIIGVHHMEAHALVARLVQSELQFPFM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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