Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000106`

染色体: Chr04 坐标: 938845-941620 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000106`
名称	SmilChr04G000106
描述	DNA repair protein RAD51 homolog 3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	938845 - 941620 / `+`

ID 对照

NCBI Gene ID	`LOC131022035`
GeneID	`131022035`
locus_tag	`-`
NCBI Name	`LOC131022035`
原始查询	`SmilChr04G000106`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA repair protein RAD51 homolog 3
产物	DNA repair protein RAD51 homolog 3
Arabidopsis	`AT2G45280` (RAD51C) RAS associated with diabetes protein 51C [Source:NCBI gene (formerly Entrezgene);Acc:819136] identity=68.3; qcov=1; evalue=3.09e-164; confidence=high
Rice	`Os01g0578000` (RAD51C) - identity=64.5; qcov=1.01; evalue=7.31e-164; confidence=high
GO	GO:0000400 (four-way junction DNA binding); GO:0000707 (meiotic DNA recombinase assembly); GO:0005524 (ATP binding); GO:0005657 (replication fork); GO:0006281 (DNA repair); GO:0007131 (reciprocal meiotic recombination); GO:0008821 (crossover junction DNA endonuclease activity); GO:0016887 (ATP hydrolysis activity); GO:0033063 (Rad51B-Rad51C-Rad51D-XRCC2 complex); GO:0033065 (Rad51C-XRCC3 complex); GO:0140664 (ATP-dependent DNA damage sensor activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)); smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF03796 (DnaB_C); PF06745 (ATPase); PF08423 (Rad51)
InterPro	-
eggNOG	-
NR	GeneID:131022035

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807382.1`
2	Cytoplasm	细胞质	0.20000	`XP_057807382.1`
3	Chromosome	染色体	0.00000	`XP_057807382.1`
4	Centromere	着丝粒	0.00000	`XP_057807382.1`
5	Chromatin	染色质	0.00000	`XP_057807382.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:939154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:940050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:940221`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B126
`Chr4:940221`	`TG`	`T`	1bp_deletion	CDS_variant	1	B126
`Chr4:940223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr4:940303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,A9,B46,B66
`Chr4:940313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr4:940324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr4:940356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B15,C68,C8,C87,D10
`Chr4:940375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr4:941122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C45,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807382.1

347 aa

174

347

Rad51

DnaB_C

ATPase

Rad51

PF08423 Rad51 85-165 aa PF03796 DnaB_C 89-276 aa PF06745 ATPase 91-250 aa PF08423 Rad51 188-336 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807382.1`	Pfam	`PF08423`	Rad51	Domain	85	165	9.9e-43	146.9	Rad51
`XP_057807382.1`	Pfam	`PF03796`	DnaB_C	Domain	89	276	9.6e-11	42.3	DnaB-like helicase C terminal domain
`XP_057807382.1`	Pfam	`PF06745`	ATPase	Domain	91	250	4.5e-07	30.2	KaiC
`XP_057807382.1`	Pfam	`PF08423`	Rad51	Domain	188	336	9.9e-43	146.9	Rad51

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951399.1
GATCGCTCAAATTGGGCAAAGCGAAGCGCGCGAAACCGAAACCGAAACCGAAAATGGAAGTATCGAGTCTGCCAATTTCTGCGTCGCACCGAGGAAAGTTGATATCGGCCGGCTACACTTCTCTCTCTTCTCTTTCCTCTCTCTCTCCTTCCCGTTTAGCCCGAGATTTGAAGATTTCGGAAAATGAGGCGGTGGAGATTTTGAAAATAGCATCCAGAAGGAGTGGGCTACACAAAATTGAGAGCGGAAGTCGTGCTATT...

CDS

1 records

下载 CDS FASTA

LOC131022035
ATGGAAGTATCGAGTCTGCCAATTTCTGCGTCGCACCGAGGAAAGTTGATATCGGCCGGCTACACTTCTCTCTCTTCTCTTTCCTCTCTCTCTCCTTCCCGTTTAGCCCGAGATTTGAAGATTTCGGAAAATGAGGCGGTGGAGATTTTGAAAATAGCATCCAGAAGGAGTGGGCTACACAAAATTGAGAGCGGAAGTCGTGCTATTGTGAATGGAGCACAGACGGCATGGGATATGCTGCATGAGGAGGAATCTTCCAT...

Protein

1 records

下载 Protein FASTA

XP_057807382.1
MEVSSLPISASHRGKLISAGYTSLSSLSSLSPSRLARDLKISENEAVEILKIASRRSGLHKIESGSRAIVNGAQTAWDMLHEEESSICITTSCSNLDGILGGGIHCKEVTEIGGMPGIGKTQLGIQLAVNAQIPADYGGLGGKAVYIDTEGSFIVERVLQIAEACAQDMLEYNSLLRRDSQACGVDKQPKSFLDNIFYFRVCSYTEQIAVINDLVKLISEHKDVKIVVIDSITFHFRQDFADMALRTRLLSGMSLKLMKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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