当前解析结果
SmilChr04G000109| 统一新 Gene ID | SmilChr04G000109 |
|---|---|
| 名称 | SmilChr04G000109 |
| 描述 | UDP-glucuronate 4-epimerase 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 964891 - 967172 / + |
| NCBI Gene ID | LOC131022038 |
|---|---|
| GeneID | 131022038 |
| locus_tag | - |
| NCBI Name | LOC131022038 |
| 原始查询 | SmilChr04G000109 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucuronate 4-epimerase 3-like |
| 产物 | UDP-glucuronate 4-epimerase 3-like |
| Arabidopsis | AT4G00110 (GAE3)UDP-D-glucuronate 4-epimerase 3 [Source:NCBI gene (formerly Entrezgene);Acc:828145] identity=84.7; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0791500 (OsUGlcAE3)- identity=66.4; qcov=1; evalue=0; confidence=high |
| GO | - |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022038 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057807385.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057807385.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807385.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807385.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807385.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:965567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B71,B78,C61 |
Chr4:965754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B38,B39,B68 |
Chr4:966082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B86,C10 |
Chr4:966412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:966463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:966709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B59,B69,D4 |
Chr4:966782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B60,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807385.1PF04321
RmlD_sub_bind 95-259 aa
PF02719
Polysacc_synt_2 95-300 aa
PF01370
Epimerase 95-332 aa
PF01073
3Beta_HSD 96-376 aa
PF16363
GDP_Man_Dehyd 96-415 aa
PF07993
NAD_binding_4 98-274 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807385.1 |
Pfam | PF04321 |
RmlD_sub_bind | Domain | 95 | 259 | 7.7e-14 | 52.1 | RmlD substrate binding domain |
XP_057807385.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 95 | 300 | 2.1e-09 | 37.7 | Polysaccharide biosynthesis protein |
XP_057807385.1 |
Pfam | PF01370 |
Epimerase | Family | 95 | 332 | 2.1e-53 | 181.9 | NAD dependent epimerase/dehydratase family |
XP_057807385.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 96 | 376 | 9.4e-14 | 51.8 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057807385.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 96 | 415 | 9e-48 | 164.1 | GDP-mannose 4,6 dehydratase |
XP_057807385.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 98 | 274 | 1.2e-05 | 25.3 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。