Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000110

染色体: Chr04 坐标: 967949-971974 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000110
名称SmilChr04G000110
描述uncharacterized SmilChr04G000110
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向967949 - 971974 / -

ID 对照

NCBI Gene IDLOC131022039
GeneID131022039
locus_tag-
NCBI NameLOC131022039
原始查询SmilChr04G000110

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述polyphosphatidylinositol phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:819140]; symbol=AT2G45320; hit=AT2G45320; species=arabidopsis; confidence=high
产物polyphosphatidylinositol phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:819140]; symbol=AT2G45320; hit=AT2G45320; species=arabidopsis; confidence=high
ArabidopsisAT2G45320 (AT2G45320)
polyphosphatidylinositol phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:819140]
identity=62.2; qcov=0.983; evalue=1.24e-161; confidence=high
RiceOs06g0571300
-
identity=43.7; qcov=0.328; evalue=3.18e-22; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131022039

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057807386.1
2 Trans-golgi network Trans-golgi network 0.20000 XP_057807386.1
3 Nucleus 细胞核 0.00000 XP_057807389.1
4 Chromosome 染色体 0.00000 XP_057807389.1
5 Centromere 着丝粒 0.00000 XP_057807389.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:968303 G A EMS_canonical_SNV CDS_variant 2 A11,B2
Chr4:968313 G A EMS_canonical_SNV CDS_variant 1 C82
Chr4:968593 C T EMS_canonical_SNV CDS_variant 3 A4,C13,C73
Chr4:968622 C T EMS_canonical_SNV CDS_variant 1 B59
Chr4:969007 G A EMS_canonical_SNV CDS_variant 4 B71,B78,B89,C61
Chr4:969019 C T EMS_canonical_SNV CDS_variant 5 A21,A9,B2,B74,C22
Chr4:969059 G A EMS_canonical_SNV CDS_variant 1 B100

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057951405.1
ATCTTATTATGAAGAAATAGAAGCAATGAGAAATTAGGAGATCTCTAAAATCAGAGAAAACGTTGCTGGAATTGTGATTTCGTGGATCGTGAGCTTCTGCTAAAAGTTGTTAACTAACTTCAAATCACGCAGAAAGAGCTGGAATTTAGATTCACTGCAGTTGAAGGTAGAGAGTAGGCCATTTTAGGGAGTACAGTATGGTGCTGGTGAAGAGAATATGTGTTGGATGGAATCGGTTGCTTTTGCTTCTTCCAGCACTT...
XM_057951403.1
GAAATTAGGAGATCTCTAAAATCAGAGAAAACGTTGCTGGAATTGTGATTTCGTGGATCGTGAGCTTCTGCTAAAAGTTGTTAACTAACGGGGTAAGTTCGTTTGCTGAAGCTGCATACATTGCGATTGTTATTGCAGTTCAAATCACGCAGAAAGAGCTGGAATTTAGATTCACTGCAGTTGAAGGTAGAGAGTAGGCCATTTTAGGGAGTACAGTATGGTGCTGGTGAAGAGAATATGTGTTGGATGGAATCGGTTGC...

CDS

4 records

下载 CDS FASTA
LOC131022039
ATGGTGCTGGTGAAGAGAATATGTGTTGGATGGAATCGGTTGCTTTTGCTTCTTCCAGCACTTATTTTAATTCCTCACTTTCTATCAGTCAAGGAGCTCCATCAGCAAAGGGATTTTCAGGATGTACCTAAGGAGAAGCCAAAGAAGTCCAATCATCTTATCCAAGGACCTGCTGCTGGGGAGGGTCTTGCTGATCGTTTGCAATGCCGAGGAACAAGGGCTCTTGATAGAACACAATTTCTGAAGTTTCGTAACCATTC...
LOC131022039
ATGGTGCTGGTGAAGAGAATATGTGTTGGATGGAATCGGTTGCTTTTGCTTCTTCCAGCACTTATTTTAATTCCTCACTTTCTATCAGTCAAGGAGCTCCATCAGCAAAGGGATTTTCAGGATGTACCTAAGGAGAAGCCAAAGAAGTCCAATCATCTTATCCAAGGACCTGCTGCTGGGGAGGGTCTTGCTGATCGTTTGCAATGCCGAGGAACAAGGGCTCTTGATAGAACACAATTTCTGAAGTTTCGTAACCATTC...

Protein

4 records

下载 Protein FASTA
XP_057807386.1
MVLVKRICVGWNRLLLLLPALILIPHFLSVKELHQQRDFQDVPKEKPKKSNHLIQGPAAGEGLADRLQCRGTRALDRTQFLKFRNHSLPTDHVALVTVFTTYNSTVDSRPIELVTVGNMSYNKVERSMAILNVFLNFVQVTMPQSNVIILTDPASDLPLHRDMVTIQPIQGEYSRDKLMLQRIRSYIMFLQTRLEKLEQKQEQVTHFIFTDSDIAVIGDLGEIFSDYPNFDLALTFRNNKDQPLNSGFIAVRGTADGIQR...
XP_057807387.1
MVLVKRICVGWNRLLLLLPALILIPHFLSVKELHQQRDFQDVPKEKPKKSNHLIQGPAAGEGLADRLQCRGTRALDRTQFLKFRNHSLPTDHVALVTVFTTYNSTVDSRPIELVTVGNMSYNKVERSMAILNVFLNFVQVTMPQSNVIILTDPASDLPLHRDMVTIQPIQGEYSRDKLMLQRIRSYIMFLQTRLEKLEQKQEQVTHFIFTDSDIAVIGDLGEIFSDYPNFDLALTFRNNKDQPLNSGFIAVRGTADGIQR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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