当前解析结果
SmilChr04G000134| 统一新 Gene ID | SmilChr04G000134 |
|---|---|
| 名称 | SmilChr04G000134 |
| 描述 | uncharacterized SmilChr04G000134 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1151577 - 1153630 / + |
| NCBI Gene ID | LOC131021105 |
|---|---|
| GeneID | 131021105 |
| locus_tag | - |
| NCBI Name | LOC131021105 |
| 原始查询 | SmilChr04G000134 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | AT3G29750 (AT3G29750)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822661] identity=28.2; qcov=0.278; evalue=2.48e-10; confidence=weak |
| Rice | Os04g0191000- identity=25; qcov=0.911; evalue=2.11e-29; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02160 (Peptidase_A3); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021105 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806177.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057806177.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806177.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806177.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806177.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1151895 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B124,B22,B93,C25 |
Chr4:1151895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B22,B93,C25 |
Chr4:1151923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B90 |
Chr4:1151926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B16,B63,B83,C23,C79 |
Chr4:1151928 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B55 |
Chr4:1151928 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B55 |
Chr4:1151931 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B46,B90 |
Chr4:1151931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B90 |
Chr4:1151933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr4:1151937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C74 |
Chr4:1151943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr4:1151987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806177.1PF03732
PEG10_N-capsid 72-143 aa
PF13650
Asp_protease_2 374-459 aa
PF02160
Peptidase_A3 380-459 aa
PF08284
RVP_2 381-463 aa
PF30863
PRO_PEG10-RTL1 383-478 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806177.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 72 | 143 | 1.4e-10 | 42.1 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057806177.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 374 | 459 | 2.3e-05 | 25.7 | Aspartyl protease |
XP_057806177.1 |
Pfam | PF02160 |
Peptidase_A3 | Family | 380 | 459 | 5.1e-07 | 30.1 | Cauliflower mosaic virus peptidase (A3) |
XP_057806177.1 |
Pfam | PF08284 |
RVP_2 | Domain | 381 | 463 | 2.1e-09 | 38.0 | Retroviral aspartyl protease |
XP_057806177.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 383 | 478 | 1.6e-10 | 42.1 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。